EMBOSS explorer

tfscan

Identify transcription factor binding sites in DNA sequences (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Select class

Transfac database data file (optional). Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here:
  2. To upload a data file from your local computer, select it here:
Required section
Number of mismatches
Additional section
Display matches equal to or above this length
Output section
Output report format
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.