| Trait ID (count=155) | Type | Name | Pearson's Correlation Coefficient | Position | Description | ||
|---|---|---|---|---|---|---|---|
| AT3G04120 | gene | GAPC1 | 1.00 | 3:1080942 | encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS. | ||
| AT5G25460 | gene | DGR2 | 0.97 | 5:8863224 | Protein of unknown function%2C DUF642%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to karrikin%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF642 (TAIR:AT5G11420.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | ||
| AT5G08300 | gene | 0.96 | 5:2667361 | Succinyl-CoA ligase%2C alpha subunit%3B FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity%2C copper ion binding%2C metal ion binding%3B INVOLVED IN: response to cadmium ion%2C metabolic process%3B LOCATED IN: mitochondrion%2C cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase%2C alpha subunit (InterPro:IPR005810)%2C ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C ATP-citrate lyase/succinyl-CoA ligase%2C active site (InterPro:IPR017440)%2C CoA-binding (InterPro:IPR003781)%2C Succinyl-CoA synthetase-like (InterPro:IPR016102)%3B BEST Arabidopsis thaliana protein match is: Succinyl-CoA ligase%2C alpha subunit (TAIR:AT5G23250.1)%3B Has 9706 Blast hits to 9705 proteins in 2093 species: Archae - 338%3B Bacteria - 4848%3B Metazoa - 444%3B Fungi - 287%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 3646 (source: NCBI BLink). | |||
| AT3G11940 | gene | RPS5A | 0.96 | 3:3777824 | One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant%2C and development is completely arrested at an early embryonic stage in the homozygous mutant. | ||
| AT3G16780 | gene | 0.96 | 3:5708826 | Ribosomal protein L19e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196)%2C Ribosomal protein L19/L19e%2C domain 3 (InterPro:IPR015974)%2C Ribosomal protein L19/L19e%2C domain 1 (InterPro:IPR015972)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L19e family protein (TAIR:AT4G02230.1)%3B Has 1139 Blast hits to 1139 proteins in 410 species: Archae - 291%3B Bacteria - 0%3B Metazoa - 317%3B Fungi - 171%3B Plants - 158%3B Viruses - 0%3B Other Eukaryotes - 202 (source: NCBI BLink). | |||
| AT3G52930 | gene | FBA8 | 0.96 | 3:19626748 | Aldolase superfamily protein%3B FUNCTIONS IN: copper ion binding%3B INVOLVED IN: response to cadmium ion%2C response to karrikin%2C response to salt stress%2C pentose-phosphate shunt%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C Fructose-bisphosphate aldolase%2C class-I (InterPro:IPR000741)%3B BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT2G36460.1)%3B Has 5003 Blast hits to 4997 proteins in 974 species: Archae - 0%3B Bacteria - 709%3B Metazoa - 1414%3B Fungi - 8%3B Plants - 477%3B Viruses - 0%3B Other Eukaryotes - 2395 (source: NCBI BLink). | ||
| AT3G55280 | gene | RPL23AB | 0.96 | 3:20500234 | 60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA | ||
| AT5G02870 | gene | 0.96 | 5:657675 | Ribosomal protein L4/L1 family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136)%2C Ribosomal protein L4/L1e%2C eukaryotic/archaeal%2C conserved site (InterPro:IPR013000)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT3G09630.1)%3B Has 1138 Blast hits to 1137 proteins in 402 species: Archae - 316%3B Bacteria - 12%3B Metazoa - 270%3B Fungi - 177%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 246 (source: NCBI BLink). | |||
| AT3G13930 | gene | 0.96 | 3:4595767 | Dihydrolipoamide acetyltransferase%2C long form protein%3B FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity%2C copper ion binding%3B INVOLVED IN: pyruvate metabolic process%2C metabolic process%3B LOCATED IN: mitochondrion%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase%2C lipoyl-binding site (InterPro:IPR003016)%2C Dihydrolipoamide acetyltransferase%2C long form (InterPro:IPR006257)%2C E3 binding (InterPro:IPR004167)%2C 2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (InterPro:IPR001078)%2C Single hybrid motif (InterPro:IPR011053)%2C Biotin/lipoyl attachment (InterPro:IPR000089)%3B BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase%2C long form protein (TAIR:AT1G54220.2)%3B Has 21425 Blast hits to 19790 proteins in 2331 species: Archae - 106%3B Bacteria - 12026%3B Metazoa - 730%3B Fungi - 474%3B Plants - 369%3B Viruses - 0%3B Other Eukaryotes - 7720 (source: NCBI BLink). | |||
| AT3G48870 | gene | HSP93-III | 0.96 | 3:18122118 | Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import. | ||
| AT1G18080 | gene | ATARCA | 0.96 | 1:6222201 | Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. It is a scaffold protein that acts downstream of and is phosphorylated by WNK8 in the glucose responsiveness and flowering pathways . Knockout mutants show insensitivity to gibberellin in GA-induced seed germination. | ||
| AT2G30970 | gene | ASP1 | 0.96 | 2:13178829 | ASPARTATE AMINOTRANSFERASE 1 | ||
| AT1G15690 | gene | AVP1 | 0.95 | 1:5398926 | Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase%3B EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined%2C including meristems and floral organ primordium. Expression is particularly enhanced in pollen%2C and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1. | ||
| AT1G52300 | gene | 0.95 | 1:19474898 | Zinc-binding ribosomal protein family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: cytosolic ribosome%2C ribosome%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e%2C conserved site (InterPro:IPR018267)%2C Ribosomal protein%2C zinc-binding domain (InterPro:IPR011332)%2C Ribosomal protein L37ae/L37e%2C N-terminal domain (InterPro:IPR011331)%2C Ribosomal protein L37e (InterPro:IPR001569)%3B BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G16080.1)%3B Has 991 Blast hits to 991 proteins in 346 species: Archae - 293%3B Bacteria - 0%3B Metazoa - 303%3B Fungi - 141%3B Plants - 122%3B Viruses - 0%3B Other Eukaryotes - 132 (source: NCBI BLink). | |||
| AT5G39740 | gene | RPL5B | 0.95 | 5:15903279 | Encodes a ribosomal protein RPL5B that is involved in ribosome biogenesis and plays a role in organ size control by promoting cell proliferation and preventing compensation in normal leaf development. | ||
| AT3G16080 | gene | 0.95 | 3:5454762 | Zinc-binding ribosomal protein family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e%2C conserved site (InterPro:IPR018267)%2C Ribosomal protein%2C zinc-binding domain (InterPro:IPR011332)%2C Ribosomal protein L37ae/L37e%2C N-terminal domain (InterPro:IPR011331)%2C Ribosomal protein L37e (InterPro:IPR001569)%3B BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT1G52300.1)%3B Has 993 Blast hits to 993 proteins in 346 species: Archae - 294%3B Bacteria - 0%3B Metazoa - 303%3B Fungi - 142%3B Plants - 122%3B Viruses - 0%3B Other Eukaryotes - 132 (source: NCBI BLink). | |||
| AT2G47610 | gene | 0.95 | 2:19529743 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic ribosome%2C cytosolic large ribosomal subunit%2C nucleolus%2C plasma membrane%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L7A/L8 (InterPro:IPR001921)%2C Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492)%2C Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038)%2C Ribosomal protein L7Ae conserved site (InterPro:IPR004037)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT3G62870.1)%3B Has 2106 Blast hits to 2104 proteins in 415 species: Archae - 332%3B Bacteria - 1%3B Metazoa - 722%3B Fungi - 352%3B Plants - 299%3B Viruses - 0%3B Other Eukaryotes - 400 (source: NCBI BLink). | |||
| AT2G36530 | gene | LOS2 | 0.95 | 2:15320756 | Involved in light-dependent cold tolerance and encodes an enolase. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | ||
| AT5G39580 | gene | 0.95 | 5:15847065 | Peroxidase superfamily protein%3B FUNCTIONS IN: peroxidase activity%2C heme binding%3B INVOLVED IN: defense response to fungus%2C N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant peroxidase (InterPro:IPR000823)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G64120.1)%3B Has 3879 Blast hits to 3855 proteins in 171 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 13%3B Plants - 3857%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink). | |||
| AT1G49600 | gene | RBP47A | 0.95 | 1:18356799 | RNA-binding protein 47A (RBP47A)%3B FUNCTIONS IN: RNA binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein 47B (TAIR:AT3G19130.1)%3B Has 46260 Blast hits to 24920 proteins in 980 species: Archae - 10%3B Bacteria - 2612%3B Metazoa - 22234%3B Fungi - 5462%3B Plants - 7399%3B Viruses - 56%3B Other Eukaryotes - 8487 (source: NCBI BLink). | ||
| AT3G08580 | gene | AAC1 | 0.95 | 3:2605435 | mitochondrial ADP/ATP carrier | ||
| AT5G57290 | gene | 0.95 | 5:23206696 | 60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT4G25890.1)%3B Has 1008 Blast hits to 988 proteins in 201 species: Archae - 2%3B Bacteria - 26%3B Metazoa - 438%3B Fungi - 137%3B Plants - 273%3B Viruses - 5%3B Other Eukaryotes - 127 (source: NCBI BLink). | |||
| AT5G56350 | gene | 0.95 | 5:22819936 | Pyruvate kinase family protein%3B FUNCTIONS IN: pyruvate kinase activity%2C potassium ion binding%2C magnesium ion binding%2C catalytic activity%3B INVOLVED IN: glycolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyruvate kinase%2C C-terminal-like (InterPro:IPR015795)%2C Pyruvate kinase%2C active site (InterPro:IPR018209)%2C Pyruvate kinase%2C beta-barrel-like (InterPro:IPR011037)%2C Pyruvate kinase%2C alpha/beta (InterPro:IPR015794)%2C Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core (InterPro:IPR015813)%2C Pyruvate kinase (InterPro:IPR001697)%2C Pyruvate kinase%2C barrel (InterPro:IPR015793)%3B BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT4G26390.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT2G16600 | gene | ROC3 | 0.95 | 2:7200423 | Encodes cytosolic cyclophilin ROC3. | ||
| AT3G28900 | gene | 0.95 | 3:10902003 | Ribosomal protein L34e superfamily protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e%2C conserved site (InterPro:IPR018065)%2C Ribosomal protein L34e (InterPro:IPR008195)%3B BEST Arabidopsis thaliana protein match is: ribosomal protein L34 (TAIR:AT1G69620.1)%3B Has 932 Blast hits to 932 proteins in 308 species: Archae - 48%3B Bacteria - 0%3B Metazoa - 298%3B Fungi - 143%3B Plants - 198%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink). | |||
| AT5G02490 | gene | Hsp70-2 | 0.95 | 5:550035 | Heat shock protein 70 (Hsp 70) family protein%3B FUNCTIONS IN: protein binding%3B INVOLVED IN: protein folding%2C response to cadmium ion%2C response to heat%2C response to bacterium%3B LOCATED IN: cytosol%2C cell wall%2C plasma membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein 70%2C conserved site (InterPro:IPR018181)%2C Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1)%3B Has 34231 Blast hits to 33880 proteins in 4856 species: Archae - 163%3B Bacteria - 16495%3B Metazoa - 3845%3B Fungi - 1761%3B Plants - 1263%3B Viruses - 309%3B Other Eukaryotes - 10395 (source: NCBI BLink). | ||
| AT3G48930 | gene | EMB1080 | 0.95 | 3:18140771 | embryo defective 1080 (EMB1080)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C embryo development ending in seed dormancy%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C cell wall%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Ribosomal protein S17%2C archaeal (InterPro:IPR019978)%2C Ribosomal protein S17%2C conserved site (InterPro:IPR019979)%2C Ribosomal protein S17 (InterPro:IPR000266)%3B BEST Arabidopsis thaliana protein match is: ribosomal protein S11-beta (TAIR:AT5G23740.1)%3B Has 1290 Blast hits to 1288 proteins in 469 species: Archae - 240%3B Bacteria - 242%3B Metazoa - 305%3B Fungi - 148%3B Plants - 140%3B Viruses - 0%3B Other Eukaryotes - 215 (source: NCBI BLink). | ||
| AT4G15000 | gene | 0.94 | 4:8571816 | Ribosomal L27e protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C intracellular%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e%2C conserved site (InterPro:IPR018262)%2C Ribosomal protein L27e (InterPro:IPR001141)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1)%3B Has 764 Blast hits to 764 proteins in 292 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 341%3B Fungi - 149%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 135 (source: NCBI BLink). | |||
| AT5G60670 | gene | 0.94 | 5:24380504 | Ribosomal protein L11 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L11%2C C-terminal domain (InterPro:IPR020783)%2C Ribosomal protein L11%2C N-terminal domain (InterPro:IPR020784)%2C Ribosomal protein L11%2C conserved site (InterPro:IPR020785)%2C Ribosomal protein L11 (InterPro:IPR000911)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L11 family protein (TAIR:AT3G53430.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT2G19730 | gene | 0.94 | 2:8511486 | Ribosomal L28e protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT4G29410.2)%3B Has 531 Blast hits to 531 proteins in 211 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 280%3B Fungi - 94%3B Plants - 107%3B Viruses - 0%3B Other Eukaryotes - 50 (source: NCBI BLink). | |||
| AT4G39090 | gene | RD19 | 0.94 | 4:18215542 | Similar to cysteine proteinases%2C induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R%E2%80%93mediated resistance response. | ||
| AT1G07790 | gene | HTB1 | 0.94 | 1:2412938 | Encodes a histone 2B (H2B) protein. | ||
| AT4G09000 | gene | GRF1 | 0.94 | 4:5775210 | Encodes a 14-3-3 gene%2C designated GRF1 chi (for general regulatory factor1-G-box factor 14-3-3 homolog isoform chi). The major native forms of 14-3-3s are homo- and hetero-dimers%2C the biological functions of which are to interact physically with specific client proteins and thereby effect a change in the client. As a result%2C 14-3-3s are involved in a vast array of processes such as the response to stress%2C cell-cycle control%2C and apoptosis%2C serving as adapters%2C activators%2C and repressors. There are currently 133 full-length sequences available. | ||
| AT5G14450 | gene | 0.94 | 5:4658441 | GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C carboxylesterase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G26430.1)%3B Has 3217 Blast hits to 3179 proteins in 111 species: Archae - 0%3B Bacteria - 82%3B Metazoa - 0%3B Fungi - 14%3B Plants - 3119%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink). | |||
| AT3G11510 | gene | 0.94 | 3:3623448 | Ribosomal protein S11 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C nucleolus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971)%2C Ribosomal S11%2C conserved site (InterPro:IPR018102)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S11 family protein (TAIR:AT2G36160.1)%3B Has 8773 Blast hits to 8773 proteins in 2901 species: Archae - 250%3B Bacteria - 4863%3B Metazoa - 587%3B Fungi - 162%3B Plants - 736%3B Viruses - 0%3B Other Eukaryotes - 2175 (source: NCBI BLink). | |||
| AT1G27400 | gene | 0.94 | 1:9515114 | Ribosomal protein L22p/L17e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%2C plasma membrane%2C chloroplast%2C vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063)%2C Ribosomal protein L22/L17%2C eukaryotic/archaeal (InterPro:IPR005721)%2C Ribosomal protein L22/L17%2C conserved site (InterPro:IPR018260)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L22p/L17e family protein (TAIR:AT1G67430.1)%3B Has 2094 Blast hits to 2094 proteins in 650 species: Archae - 321%3B Bacteria - 492%3B Metazoa - 519%3B Fungi - 182%3B Plants - 156%3B Viruses - 0%3B Other Eukaryotes - 424 (source: NCBI BLink). | |||
| AT3G60750 | gene | 0.94 | 3:22453668 | Transketolase%3B FUNCTIONS IN: catalytic activity%2C transketolase activity%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%3B LOCATED IN: chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Transketolase%2C bacterial-like (InterPro:IPR005478)%2C Transketolase%2C N-terminal (InterPro:IPR005474)%2C Transketolase%2C C-terminal (InterPro:IPR005476)%2C Transketolase-like%2C C-terminal (InterPro:IPR015941)%2C Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (InterPro:IPR009014)%2C Transketolase-like%2C pyrimidine-binding domain (InterPro:IPR005475)%2C Transketolase binding site (InterPro:IPR020826)%3B BEST Arabidopsis thaliana protein match is: Transketolase (TAIR:AT2G45290.1)%3B Has 19296 Blast hits to 19203 proteins in 2759 species: Archae - 202%3B Bacteria - 11440%3B Metazoa - 321%3B Fungi - 314%3B Plants - 204%3B Viruses - 0%3B Other Eukaryotes - 6815 (source: NCBI BLink). | |||
| AT4G12650 | gene | 0.94 | 4:7467845 | Endomembrane protein 70 protein family%3B LOCATED IN: integral to membrane%2C Golgi apparatus%2C plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G35160.2)%3B Has 1639 Blast hits to 1594 proteins in 317 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 635%3B Fungi - 224%3B Plants - 501%3B Viruses - 0%3B Other Eukaryotes - 272 (source: NCBI BLink). | |||
| AT4G09800 | gene | RPS18C | 0.94 | 4:6173712 | encodes a ribosomal protein S18C%2C a constituent of the small subunit of the ribosomal complex | ||
| AT1G64090 | gene | RTNLB3 | 0.94 | 1:23789062 | Reticulan like protein B3 (RTNLB3)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endoplasmic reticulum%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388)%3B BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 3 (TAIR:AT5G41600.1)%3B Has 1238 Blast hits to 1236 proteins in 112 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 713%3B Fungi - 17%3B Plants - 487%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink). | ||
| AT1G26910 | gene | RPL10B | 0.94 | 1:9321650 | Ribosomal protein L16p/L10e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: response to UV-B%2C developmental process%2C translation%3B LOCATED IN: ribosome%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197)%2C Ribosomal protein L10e/L16 (InterPro:IPR016180)%2C Ribosomal protein L10e%2C conserved site (InterPro:IPR018255)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G14320.1)%3B Has 1680 Blast hits to 1678 proteins in 606 species: Archae - 325%3B Bacteria - 13%3B Metazoa - 563%3B Fungi - 162%3B Plants - 159%3B Viruses - 0%3B Other Eukaryotes - 458 (source: NCBI BLink). | ||
| AT1G78300 | gene | GRF2 | 0.94 | 1:29461391 | G-box binding factor GF14 omega encoding a 14-3-3 protein | ||
| AT3G04090 | gene | SIP1A | 0.94 | 3:1071984 | Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER. | ||
| AT1G14810 | gene | 0.94 | 1:5102424 | encodes an aspartate semialdehyde dehydrogenase%2C which produces the branch point intermediate for lysine and threonine/methionine biosynthesis | |||
| AT5G19820 | gene | emb2734 | 0.94 | 5:6695174 | embryo defective 2734 (emb2734)%3B FUNCTIONS IN: lyase activity%2C binding%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: cell wall%2C phycobilisome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357)%2C Armadillo-like helical (InterPro:IPR011989)%2C HEAT%2C type 2 (InterPro:IPR021133)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G27640.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | ||
| AT4G01610 | gene | 0.94 | 4:694582 | Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type endopeptidase activity%2C cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%2C regulation of catalytic activity%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Peptidase C1A%2C cathepsin B (InterPro:IPR015643)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%2C Peptidase%2C cysteine peptidase active site (InterPro:IPR000169)%2C Peptidase C1A%2C propeptide (InterPro:IPR012599)%3B BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1)%3B Has 7486 Blast hits to 7443 proteins in 692 species: Archae - 63%3B Bacteria - 158%3B Metazoa - 3254%3B Fungi - 4%3B Plants - 1745%3B Viruses - 146%3B Other Eukaryotes - 2116 (source: NCBI BLink). | |||
| AT3G52730 | gene | 0.94 | 3:19542819 | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein%3B FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity%3B INVOLVED IN: mitochondrial electron transport%2C ubiquinol to cytochrome c%3B LOCATED IN: mitochondrial envelope%2C mitochondrion%2C mitochondrial respiratory chain complex III%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase%2C UQCRX/QCR9-like (InterPro:IPR008027)%3B Has 75 Blast hits to 75 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 19%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink). | |||
| AT5G62350 | gene | 0.94 | 5:25037191 | Plant invertase/pectin methylesterase inhibitor superfamily protein%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: response to salt stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT3G47380.1)%3B Has 780 Blast hits to 773 proteins in 42 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 780%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT5G23535 | gene | 0.94 | 5:7935316 | KOW domain-containing protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%2C large ribosomal subunit%3B CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991)%2C Ribosomal protein L24/L26%2C conserved site (InterPro:IPR005825)%2C KOW (InterPro:IPR005824)%2C Ribosomal protein L24 (InterPro:IPR003256)%3B BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G54600.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT1G27450 | gene | APT1 | 0.94 | 1:9531809 | Adenosine phosphoribosyl transferase(E.C:2.4.2.7)%2C involved in the one-step salvage of adenine to AMP. | ||
| AT2G23350 | gene | PAB4 | 0.94 | 2:9942915 | polyadenylate-binding protein%2C putative / PABP%2C putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed. | ||
| AT1G26630 | gene | FBR12 | 0.94 | 1:9205800 | Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. | ||
| AT3G03600 | gene | RPS2 | 0.94 | 3:867548 | Structural component of the mitochondrial ribosome small subunit | ||
| AT1G29980 | gene | 0.93 | 1:10503239 | INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF642 (TAIR:AT2G34510.1)%3B Has 291 Blast hits to 264 proteins in 21 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 0%3B Fungi - 0%3B Plants - 279%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT3G01470 | gene | HB-1 | 0.93 | 3:182396 | Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development. | ||
| AT3G49010 | gene | BBC1 | 0.93 | 3:18166708 | Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). | ||
| AT5G16130 | gene | 0.93 | 5:5268421 | Ribosomal protein S7e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C nucleolus%2C plasma membrane%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT3G02560.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT1G15930 | gene | 0.93 | 1:5471316 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%2C translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530)%2C Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G32060.2)%3B Has 1044 Blast hits to 1044 proteins in 336 species: Archae - 248%3B Bacteria - 0%3B Metazoa - 315%3B Fungi - 181%3B Plants - 131%3B Viruses - 0%3B Other Eukaryotes - 169 (source: NCBI BLink). | |||
| AT1G56070 | gene | LOS1 | 0.93 | 1:20967652 | encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. | ||
| AT4G35000 | gene | APX3 | 0.93 | 4:16664724 | Encodes a microsomal ascorbate peroxidase APX3. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. The APX3 protein interacts with AKR2 (ankyrin-containing protein that interacts with AFT1) and AFT1%2C a 14-3-3 protein. | ||
| AT2G01250 | gene | 0.93 | 2:132578 | Ribosomal protein L30/L7 family protein%3B FUNCTIONS IN: structural constituent of ribosome%2C transcription regulator activity%3B INVOLVED IN: translation%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L30%2C N-terminal (InterPro:IPR012988)%2C Ribosomal protein L7%2C eukaryotic (InterPro:IPR005998)%2C Ribosomal protein L30p/L7e%2C conserved region (InterPro:IPR000517)%2C Ribosomal protein L30%2C conserved site (InterPro:IPR018038)%2C Ribosomal protein L30%2C ferredoxin-like fold domain (InterPro:IPR016082)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1)%3B Has 1297 Blast hits to 1295 proteins in 388 species: Archae - 210%3B Bacteria - 1%3B Metazoa - 453%3B Fungi - 213%3B Plants - 195%3B Viruses - 0%3B Other Eukaryotes - 225 (source: NCBI BLink). | |||
| AT5G09510 | gene | 0.93 | 5:2955008 | Ribosomal protein S19 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C nucleolus%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S15%2C eukaryotic/archaeal (InterPro:IPR005713)%2C Ribosomal protein S19/S15 (InterPro:IPR002222)%2C Ribosomal protein S19 conserved site (InterPro:IPR020934)%3B BEST Arabidopsis thaliana protein match is: cytosolic ribosomal protein S15 (TAIR:AT1G04270.1)%3B Has 8223 Blast hits to 8223 proteins in 3053 species: Archae - 256%3B Bacteria - 4027%3B Metazoa - 282%3B Fungi - 239%3B Plants - 1518%3B Viruses - 0%3B Other Eukaryotes - 1901 (source: NCBI BLink). | |||
| AT1G80460 | gene | NHO1 | 0.93 | 1:30246683 | Encodes a protein similar to glycerol kinase%2C which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1. | ||
| AT4G08950 | gene | EXO | 0.93 | 4:5740219 | EXORDIUM (EXO)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to brassinosteroid stimulus%3B LOCATED IN: cell wall%2C plant-type cell wall%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 (InterPro:IPR006766)%3B BEST Arabidopsis thaliana protein match is: Phosphate-responsive 1 family protein (TAIR:AT1G35140.1)%3B Has 398 Blast hits to 398 proteins in 24 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 396%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | ||
| AT3G04400 | gene | emb2171 | 0.93 | 3:1167250 | embryo defective 2171 (emb2171)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C embryo development ending in seed dormancy%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218)%2C Ribosomal protein L14 conserved site (InterPro:IPR019972)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT2G33370.1)%3B Has 9322 Blast hits to 9321 proteins in 3192 species: Archae - 322%3B Bacteria - 5444%3B Metazoa - 383%3B Fungi - 267%3B Plants - 817%3B Viruses - 0%3B Other Eukaryotes - 2089 (source: NCBI BLink). | ||
| AT1G70490 | gene | ARFA1D | 0.93 | 1:26563718 | A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division%2C cell expansion and cellulose production using antisense construct. | ||
| AT1G53240 | gene | mMDH1 | 0.93 | 1:19854615 | mMDH1 encodes a mitochrondrial malate dehydrogenase. It is expressed at higher levels than the other mitochrondrial isoform mMDH2 (At3G15020) according to transcript and proteomic analyses. | ||
| AT4G30190 | gene | HA2 | 0.92 | 4:14770395 | belongs to the P-type ATPase superfamily of cation-transporting ATPases%2C pumps protons out of the cell%2C generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom | ||
| AT1G17840 | gene | ABCG11 | 0.92 | 1:6142402 | Encodes a plasma membrane-localized ATP-binding cassette transporter%2C that is required for cutin transport to the extracellular matrix. | ||
| AT5G57490 | gene | VDAC4 | 0.92 | 5:23283617 | Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1%2C AT5G67500/VDAC2%2C AT5G15090/VDAC3%2C AT5G57490/VDAC4%2C AT5G15090/VDAC5). VDACs are reported to be porin-type%2C beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. | ||
| AT5G44340 | gene | TUB4 | 0.92 | 5:17859136 | beta tubulin gene | ||
| AT2G28000 | gene | CPN60A | 0.92 | 2:11926446 | Encodes chaperonin-60 alpha%2C a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development. | ||
| AT4G33680 | gene | AGD2 | 0.92 | 4:16171681 | Encodes an L%2CL-diaminopimelate aminotransferase. Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels%2C a low level of spontaneous cell death%2C callose deposition%2C and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139. | ||
| AT3G24050 | gene | GATA1 | 0.92 | 3:8685739 | Encodes a member of the GATA factor family of zinc finger transcription factors. | ||
| AT2G34480 | gene | 0.92 | 2:14532624 | Ribosomal protein L18ae/LX family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae/LX (InterPro:IPR021138)%2C Ribosomal protein L18ae (InterPro:IPR002670)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae/LX family protein (TAIR:AT1G29965.1)%3B Has 759 Blast hits to 757 proteins in 282 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 315%3B Fungi - 159%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 130 (source: NCBI BLink). | |||
| AT5G27770 | gene | 0.92 | 5:9835884 | Ribosomal L22e protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%2C nucleolus%2C plasma membrane%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L22e protein family (TAIR:AT3G05560.3)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT5G41670 | gene | 0.92 | 5:16664674 | 6-phosphogluconate dehydrogenase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: response to fructose stimulus%2C response to cadmium ion%2C response to sucrose stimulus%2C response to glucose stimulus%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase%2C NAD-binding (InterPro:IPR006115)%2C 6-phosphogluconate dehydrogenase%2C C-terminal-like (InterPro:IPR008927)%2C Dehydrogenase%2C multihelical (InterPro:IPR013328)%2C 6-phosphogluconate dehydrogenase%2C decarboxylating (InterPro:IPR006113)%2C 6-phosphogluconate dehydrogenase%2C C-terminal (InterPro:IPR006114)%2C 6-phosphogluconate dehydrogenase (InterPro:IPR006183)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Fibritin/6-phosphogluconate dehydrogenase%2C C-terminal extension (InterPro:IPR012284)%3B BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G64190.1)%3B Has 12747 Blast hits to 12577 proteins in 2621 species: Archae - 86%3B Bacteria - 8556%3B Metazoa - 692%3B Fungi - 242%3B Plants - 329%3B Viruses - 4%3B Other Eukaryotes - 2838 (source: NCBI BLink). | |||
| AT2G40660 | gene | 0.92 | 2:16965909 | Nucleic acid-binding%2C OB-fold-like protein%3B FUNCTIONS IN: tRNA binding%3B INVOLVED IN: tRNA aminoacylation for protein translation%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C tRNA-binding domain (InterPro:IPR002547)%3B BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase%2C putative / methionyl-tRNA synthetase%2C putative / MetRS%2C putative (TAIR:AT4G13780.1)%3B Has 6072 Blast hits to 6060 proteins in 2115 species: Archae - 244%3B Bacteria - 4267%3B Metazoa - 483%3B Fungi - 217%3B Plants - 163%3B Viruses - 1%3B Other Eukaryotes - 697 (source: NCBI BLink). | |||
| AT3G52880 | gene | MDAR1 | 0.92 | 3:19601167 | Encodes a peroxisomal monodehydroascorbate reductase%2C involved in the ascorbate-glutathione cycle which removes toxic H2O2 | ||
| AT1G30630 | gene | 0.92 | 1:10858232 | Coatomer epsilon subunit%3B FUNCTIONS IN: protein transporter activity%2C structural molecule activity%2C binding%3B INVOLVED IN: retrograde vesicle-mediated transport%2C Golgi to ER%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Coatomer%2C epsilon subunit (InterPro:IPR006822)%3B BEST Arabidopsis thaliana protein match is: Coatomer epsilon subunit (TAIR:AT2G34840.1)%3B Has 442 Blast hits to 442 proteins in 180 species: Archae - 6%3B Bacteria - 14%3B Metazoa - 175%3B Fungi - 90%3B Plants - 92%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink). | |||
| AT1G18540 | gene | 0.92 | 1:6376639 | Ribosomal protein L6 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L6%2C N-terminal (InterPro:IPR005568)%2C Ribosomal protein L6E (InterPro:IPR000915)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family protein (TAIR:AT1G74050.1)%3B Has 758 Blast hits to 758 proteins in 286 species: Archae - 33%3B Bacteria - 0%3B Metazoa - 332%3B Fungi - 149%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 127 (source: NCBI BLink). | |||
| AT5G41520 | gene | RPS10B | 0.92 | 5:16609021 | The gene belongs to the three-member Arabidopsis gene family encoding the eukaryote-specific protein S10e of the small cytoplasmic ribosomal subunit. | ||
| AT5G51110 | gene | 0.92 | 5:20777501 | Transcriptional coactivator/pterin dehydratase%3B FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity%3B INVOLVED IN: tetrahydrobiopterin biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533)%3B BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1)%3B Has 1849 Blast hits to 1849 proteins in 364 species: Archae - 43%3B Bacteria - 697%3B Metazoa - 0%3B Fungi - 2%3B Plants - 93%3B Viruses - 0%3B Other Eukaryotes - 1014 (source: NCBI BLink). | |||
| AT3G55410 | gene | 0.92 | 3:20541269 | 2-oxoglutarate dehydrogenase%2C E1 component%3B FUNCTIONS IN: oxoglutarate dehydrogenase (succinyl-transferring) activity%2C cobalt ion binding%2C zinc ion binding%3B INVOLVED IN: glycolysis%2C metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: 2-oxoglutarate dehydrogenase%2C E1 component (InterPro:IPR011603)%2C Dehydrogenase%2C E1 component (InterPro:IPR001017)%2C Transketolase-like%2C pyrimidine-binding domain (InterPro:IPR005475)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate dehydrogenase%2C E1 component (TAIR:AT5G65750.1)%3B Has 10999 Blast hits to 10962 proteins in 1954 species: Archae - 31%3B Bacteria - 4409%3B Metazoa - 546%3B Fungi - 299%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 5547 (source: NCBI BLink). | |||
| AT5G65310 | gene | HB5 | 0.92 | 5:26101818 | Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness%2C mediating the inhibitory effect of ABA on growth during seedling establishment. | ||
| AT2G39870 | gene | 0.92 | 2:16643381 | unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1)%3B Has 73 Blast hits to 71 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 2%3B Plants - 69%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT3G52300 | gene | ATPQ | 0.92 | 3:19396424 | ATP synthase D chain%2C mitochondrial (ATPQ)%3B FUNCTIONS IN: copper ion binding%2C zinc ion binding%3B INVOLVED IN: response to salt stress%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 16 growth stages%3B Has 290 Blast hits to 290 proteins in 107 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 173%3B Fungi - 39%3B Plants - 62%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink). | ||
| AT1G11680 | gene | CYP51G1 | 0.92 | 1:3938422 | putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. | ||
| AT2G29980 | gene | FAD3 | 0.92 | 2:12781524 | Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. | ||
| AT1G14320 | gene | SAC52 | 0.92 | 1:4888114 | Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5%2C which encodes a thermospermine synthase%2C by enhancing translation of acl5 and itself. | ||
| AT1G04480 | gene | 0.92 | 1:1215925 | Ribosomal protein L14p/L23e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218)%2C Ribosomal protein L14 conserved site (InterPro:IPR019972)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT3G04400.1)%3B Has 9301 Blast hits to 9300 proteins in 3178 species: Archae - 321%3B Bacteria - 5427%3B Metazoa - 383%3B Fungi - 266%3B Plants - 815%3B Viruses - 0%3B Other Eukaryotes - 2089 (source: NCBI BLink). | |||
| AT5G66920 | gene | sks17 | 0.91 | 5:26722701 | SKU5 similar 17 (sks17)%3B FUNCTIONS IN: oxidoreductase activity%2C copper ion binding%3B INVOLVED IN: response to karrikin%3B LOCATED IN: cell wall%2C plant-type cell wall%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Multicopper oxidase%2C type 3 (InterPro:IPR011707)%2C Cupredoxin (InterPro:IPR008972)%2C Multicopper oxidase%2C type 2 (InterPro:IPR011706)%2C Multicopper oxidase%2C type 1 (InterPro:IPR001117)%3B BEST Arabidopsis thaliana protein match is: SKU5 similar 15 (TAIR:AT4G37160.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | ||
| AT1G56700 | gene | 0.91 | 1:21256025 | Peptidase C15%2C pyroglutamyl peptidase I-like%3B INVOLVED IN: proteolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C15%2C pyroglutamyl peptidase I (InterPro:IPR000816)%2C Peptidase C15%2C pyroglutamyl peptidase I-like (InterPro:IPR016125)%3B BEST Arabidopsis thaliana protein match is: Peptidase C15%2C pyroglutamyl peptidase I-like (TAIR:AT1G23440.1)%3B Has 2025 Blast hits to 2024 proteins in 879 species: Archae - 113%3B Bacteria - 1588%3B Metazoa - 114%3B Fungi - 17%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 93 (source: NCBI BLink). | |||
| AT2G38310 | gene | PYL4 | 0.91 | 2:16049918 | Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2. | ||
| AT5G49910 | gene | cpHsc70-2 | 0.91 | 5:20303334 | Stromal heat shock protein involved in protein import into chloroplast. | ||
| AT3G63460 | gene | 0.91 | 3:23430623 | transducin family protein / WD-40 repeat family protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: CUL4 RING ubiquitin ligase complex%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1)%3B Has 36264 Blast hits to 25632 proteins in 1258 species: Archae - 42%3B Bacteria - 5004%3B Metazoa - 13161%3B Fungi - 7258%3B Plants - 4512%3B Viruses - 551%3B Other Eukaryotes - 5736 (source: NCBI BLink). | |||
| AT1G34130 | gene | STT3B | 0.91 | 1:12429846 | Encodes homolog of yeast STT3%2C a subunit of oligosaccharyltransferase. | ||
| AT2G39970 | gene | PXN | 0.91 | 2:16683832 | Encodes peroxisomal membrane protein 38 (PMP38). Mutation in this protein results in enlargement of peroxisomes. Delivers NAD+ for optimal fatty acid degradation during storage oil mobilization. | ||
| AT2G17420 | gene | NTRA | 0.91 | 2:7564240 | NADPH-dependent thioredoxin reductase%2C major cytosolic isoform | ||
| AT3G06350 | gene | MEE32 | 0.91 | 3:1924270 | Encodes a bi-functional dehydroquinate-shikimate dehydrogenase enzyme that catalyzes two steps in the chorismate biosynthesis pathway. | ||
| AT5G12860 | gene | DiT1 | 0.91 | 5:4059579 | AtpOMT1 encodes dicarboxylate transporter functions both as as an oxaloacetate/malate transporter and as a 2-oxoglutarate/malate transporter. | ||
| AT1G69530 | gene | EXPA1 | 0.91 | 1:26141726 | Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al%2C Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. | ||
| AT1G09830 | gene | PUR2 | 0.91 | 1:3192568 | glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide | ||
| AT2G41950 | gene | 0.91 | 2:17513008 | unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%2C plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 53 Blast hits to 53 proteins in 24 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 0%3B Fungi - 0%3B Plants - 26%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT1G44170 | gene | ALDH3H1 | 0.91 | 1:16796400 | Encodes an aldehyde dehydrogenase induced by ABA and dehydration that can oxidize saturated aliphatic aldehydes. It is also able to oxidize beta-unsaturated aldehydes%2C but not aromatic aldehydes. Activity of ALDH3H1 is NAD +-dependent. | ||
| AT1G17170 | gene | GSTU24 | 0.91 | 1:5869543 | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). | ||
| AT1G60090 | gene | BGLU4 | 0.91 | 1:22155559 | beta glucosidase 4 (BGLU4)%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: response to karrikin%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 1 (InterPro:IPR001360)%2C Glycoside hydrolase%2C family 1%2C active site (InterPro:IPR018120)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta glucosidase 2 (TAIR:AT4G22100.1)%3B Has 11230 Blast hits to 10889 proteins in 1481 species: Archae - 144%3B Bacteria - 7786%3B Metazoa - 705%3B Fungi - 199%3B Plants - 1443%3B Viruses - 0%3B Other Eukaryotes - 953 (source: NCBI BLink). | ||
| AT5G67510 | gene | 0.91 | 5:26937621 | Translation protein SH3-like family protein%3B FUNCTIONS IN: structural constituent of ribosome%2C protein binding%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic ribosome%2C cytosolic large ribosomal subunit%2C large ribosomal subunit%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991)%2C Ribosomal protein L26%2C eukaryotic/archaeal (InterPro:IPR005756)%2C Ribosomal protein L24%2C SH3-like (InterPro:IPR014723)%2C Ribosomal protein L24/L26%2C conserved site (InterPro:IPR005825)%2C KOW (InterPro:IPR005824)%3B BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT3G49910.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT1G72020 | gene | 0.91 | 1:27109291 | unknown protein%3B Has 52 Blast hits to 52 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT3G63130 | gene | RANGAP1 | 0.91 | 3:23324479 | Encodes a RAN GTPase activating protein involved in nuclear import%2C cell plate formation and mitotic spindle formation. | ||
| AT5G13610 | gene | 0.91 | 5:4382975 | Protein of unknown function (DUF155)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF155 (InterPro:IPR003734)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF155) (TAIR:AT1G69380.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT3G07810 | gene | 0.91 | 3:2492260 | RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G47620.2)%3B Has 54138 Blast hits to 30457 proteins in 1475 species: Archae - 38%3B Bacteria - 13880%3B Metazoa - 18730%3B Fungi - 4978%3B Plants - 7803%3B Viruses - 149%3B Other Eukaryotes - 8560 (source: NCBI BLink). | |||
| AT5G56710 | gene | 0.91 | 5:22943707 | Ribosomal protein L31e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C cell wall%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054)%2C Ribosomal protein L31e%2C conserved site (InterPro:IPR020052)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L31e family protein (TAIR:AT4G26230.1)%3B Has 1085 Blast hits to 1085 proteins in 349 species: Archae - 139%3B Bacteria - 2%3B Metazoa - 457%3B Fungi - 145%3B Plants - 170%3B Viruses - 0%3B Other Eukaryotes - 172 (source: NCBI BLink). | |||
| AT5G19770 | gene | TUA3 | 0.91 | 5:6682420 | tubulin 3 | ||
| AT1G64880 | gene | 0.91 | 1:24105611 | Ribosomal protein S5 family protein%3B FUNCTIONS IN: structural constituent of ribosome%2C RNA binding%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C Golgi apparatus%2C intracellular%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding-like (InterPro:IPR014720)%2C Ribosomal protein S5%2C C-terminal (InterPro:IPR005324)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C Ribosomal protein S5 (InterPro:IPR000851)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C Ribosomal protein S5%2C N-terminal (InterPro:IPR013810)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT2G33800.1)%3B Has 12743 Blast hits to 11445 proteins in 2840 species: Archae - 327%3B Bacteria - 5337%3B Metazoa - 1616%3B Fungi - 508%3B Plants - 194%3B Viruses - 58%3B Other Eukaryotes - 4703 (source: NCBI BLink). | |||
| AT5G54970 | gene | 0.91 | 5:22312976 | unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT4G08390 | gene | SAPX | 0.91 | 4:5314871 | Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. | ||
| AT2G45740 | gene | PEX11D | 0.91 | 2:18839435 | member of the peroxin11 (PEX11) gene family%2C integral to peroxisome membrane%2C controls peroxisome proliferation. | ||
| AT3G25700 | gene | 0.91 | 3:9358719 | Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G42980.1)%3B Has 2947 Blast hits to 2928 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 679%3B Fungi - 106%3B Plants - 1964%3B Viruses - 0%3B Other Eukaryotes - 198 (source: NCBI BLink). | |||
| AT5G25100 | gene | 0.91 | 5:8648006 | Endomembrane protein 70 protein family%3B LOCATED IN: integral to membrane%2C Golgi apparatus%2C plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G10840.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT1G27950 | gene | LTPG1 | 0.91 | 1:9740508 | Encodes LTPG1%2C a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain. Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition%2C but no significant changes on total wax and cutin monomer loads are seen. | ||
| AT4G11010 | gene | NDPK3 | 0.91 | 4:6732420 | nucleoside diphosphate kinase 3 (ndpk3)%2C located to the inter-membrane space in mitochondria | ||
| AT2G26250 | gene | KCS10 | 0.91 | 2:11170416 | epidermis-specific%2C encodes KCS10%2C a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle. | ||
| AT1G27435 | gene | 0.91 | 1:9527501 | unknown protein%3B Has 16 Blast hits to 16 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 16%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT5G19980 | gene | GONST4 | 0.91 | 5:6749613 | Encodes a Golgi-localized nucleotide-sugar transporter. | ||
| AT5G20950 | gene | 0.91 | 5:7107272 | Glycosyl hydrolase family protein%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cell wall%2C membrane%2C plant-type cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 3%2C N-terminal (InterPro:IPR001764)%2C Glycoside hydrolase%2C family 3%2C C-terminal (InterPro:IPR002772)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%3B BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20940.1)%3B Has 10079 Blast hits to 9261 proteins in 1444 species: Archae - 71%3B Bacteria - 6091%3B Metazoa - 14%3B Fungi - 1552%3B Plants - 486%3B Viruses - 0%3B Other Eukaryotes - 1865 (source: NCBI BLink). | |||
| AT5G50760 | gene | 0.91 | 5:20644525 | SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT3G43120.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT3G49680 | gene | BCAT3 | 0.91 | 3:18422542 | Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. | ||
| AT2G05710 | gene | ACO3 | 0.91 | 2:2141329 | Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate%2C indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5' UTR of CSD2 in vitro. ACO3 is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | ||
| AT5G14040 | gene | PHT3%3B1 | 0.91 | 5:4530643 | Encodes a mitochondrial phosphate transporter. Modulates plant responses to salt stress. | ||
| AT4G34670 | gene | 0.91 | 4:16548600 | Ribosomal protein S3Ae%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae%2C conserved site (InterPro:IPR018281)%2C Ribosomal protein S3Ae (InterPro:IPR001593)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S3Ae (TAIR:AT3G04840.1)%3B Has 1362 Blast hits to 1357 proteins in 408 species: Archae - 234%3B Bacteria - 1%3B Metazoa - 463%3B Fungi - 247%3B Plants - 191%3B Viruses - 0%3B Other Eukaryotes - 226 (source: NCBI BLink). | |||
| AT3G05560 | gene | 0.90 | 3:1614178 | Ribosomal L22e protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C nucleolus%2C plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L22e protein family (TAIR:AT5G27770.1)%3B Has 686 Blast hits to 686 proteins in 236 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 333%3B Fungi - 136%3B Plants - 114%3B Viruses - 0%3B Other Eukaryotes - 103 (source: NCBI BLink). | |||
| AT4G29350 | gene | PFN2 | 0.90 | 4:14449888 | Encodes profilin2%2C a low-molecular weight%2C actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression. | ||
| AT2G21160 | gene | 0.90 | 2:9068252 | Translocon-associated protein (TRAP)%2C alpha subunit%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast thylakoid membrane%2C endoplasmic reticulum%2C plasma membrane%2C vacuole%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP)%2C alpha subunit (InterPro:IPR005595)%3B BEST Arabidopsis thaliana protein match is: Translocon-associated protein (TRAP)%2C alpha subunit (TAIR:AT2G16595.1)%3B Has 246 Blast hits to 246 proteins in 95 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 141%3B Fungi - 24%3B Plants - 60%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink). | |||
| AT1G22530 | gene | PATL2 | 0.90 | 1:7955445 | PATELLIN 2 (PATL2)%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: plasma membrane%2C chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Cellular retinaldehyde-binding/triple function%2C N-terminal (InterPro:IPR008273)%2C Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071)%2C GOLD (InterPro:IPR009038)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: PATELLIN 1 (TAIR:AT1G72150.1)%3B Has 61558 Blast hits to 35948 proteins in 2575 species: Archae - 235%3B Bacteria - 13717%3B Metazoa - 20974%3B Fungi - 8097%3B Plants - 3493%3B Viruses - 317%3B Other Eukaryotes - 14725 (source: NCBI BLink). | ||
| AT2G46370 | gene | JAR1 | 0.90 | 2:19033586 | Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro%2C (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates)%2C but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense%2C sensitivity to ozone%2C and wound responses. | ||
| AT2G27530 | gene | PGY1 | 0.90 | 2:11763217 | Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV%2C KAN1 and KAN2. | ||
| AT1G50480 | gene | THFS | 0.90 | 1:18701882 | 10-formyltetrahydrofolate synthetase (THFS) mRNA%2C complete | ||
| AT5G07090 | gene | 0.90 | 5:2202364 | Ribosomal protein S4 (RPS4A) family protein%3B FUNCTIONS IN: structural constituent of ribosome%2C protein binding%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e%2C central (InterPro:IPR013845)%2C Ribosomal protein S4e%2C N-terminal%2C conserved site (InterPro:IPR018199)%2C RNA-binding S4 (InterPro:IPR002942)%2C KOW (InterPro:IPR005824)%2C Ribosomal protein S4e%2C N-terminal (InterPro:IPR013843)%2C Ribosomal protein S4e (InterPro:IPR000876)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G58420.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT5G66680 | gene | DGL1 | 0.90 | 5:26617399 | Encodes a protein ortholog of human SOT48 or yeast WBP1%2C an essential protein subunit of the oligosaccharyltransferase (OST) complex%2C which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins. | ||
| AT2G41475 | gene | 0.90 | 2:17294978 | Embryo-specific protein 3%2C (ATS3)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase%2C PLAT/LH2 (InterPro:IPR008976)%2C Embryo-specific 3 (InterPro:IPR010417)%3B BEST Arabidopsis thaliana protein match is: Embryo-specific protein 3%2C (ATS3) (TAIR:AT5G62200.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT1G07890 | gene | APX1 | 0.90 | 1:2437281 | Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress. | ||
| AT1G77760 | gene | NIA1 | 0.90 | 1:29235721 | Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation%2C it contributes about 15%25 of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus%2C and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD%2C heme iron (cytochrome B-557)%2C and molybdenum-pterin. | ||
| AT3G60530 | gene | GATA4 | 0.90 | 3:22373013 | Encodes a member of the GATA factor family of zinc finger transcription factors. | ||
| AT5G49810 | gene | MMT | 0.90 | 5:20239293 | Arabidopsis thaliana methionine S-methyltransferase%2C an enzyme that catalyzes S -methylmethionine formation. | ||
| AT3G12180 | gene | 0.90 | 3:3883330 | Cornichon family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: intracellular signaling pathway%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377)%3B BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1)%3B Has 605 Blast hits to 605 proteins in 175 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 316%3B Fungi - 159%3B Plants - 93%3B Viruses - 0%3B Other Eukaryotes - 37 (source: NCBI BLink). | |||
| AT5G19760 | gene | 0.90 | 5:6679306 | Encodes a novel mitochondrial carrier capable of transporting both dicarboxylates (such as malate%2C oxaloacetate%2C oxoglutarate%2C and maleate) and tricarboxylates (such as citrate%2C isocitrate%2C cis-aconitate%2C and trans-aconitate). | |||
| AT2G16430 | gene | PAP10 | 0.90 | 2:7120372 | purple acid phosphatase 10 (PAP10)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C acid phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cell wall%2C plant-type cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Purple acid phosphatase%2C N-terminal (InterPro:IPR015914)%2C Metallophosphoesterase (InterPro:IPR004843)%2C Purple acid phosphatase-like%2C N-terminal (InterPro:IPR008963)%3B BEST Arabidopsis thaliana protein match is: purple acid phosphatase 12 (TAIR:AT2G27190.1)%3B Has 1746 Blast hits to 1730 proteins in 358 species: Archae - 1%3B Bacteria - 498%3B Metazoa - 186%3B Fungi - 79%3B Plants - 746%3B Viruses - 0%3B Other Eukaryotes - 236 (source: NCBI BLink). | ||
| AT1G67080 | gene | ABA4 | 0.90 | 1:25045151 | Encodes a protein involved in the photoprotection of PSII. An aba4-1 mutant completely lacks neoxanthin%2Ca component of the chromophore of the peripheral antenna system in PSII. ABA4 is required for neoxanthin biosynthesis%2C an intermediary step in abscisic acid biosynthesis%2C but no catalytic activity has been detected for the ABA4 protein. | ||
| AT1G56330 | gene | SAR1B | 0.90 | 1:21086501 | Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members%2C in two subfamilies%2C ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol. | ||
| AT3G57560 | gene | NAGK | 0.90 | 3:21310825 | encodes a N-acetylglutamate kinase%2C involved in arginine biosynthesis | ||
| AT3G04790 | gene | EMB3119 | 0.90 | 3:1313297 | Ribose 5-phosphate isomerase%2C type A protein%3B FUNCTIONS IN: ribose-5-phosphate isomerase activity%3B INVOLVED IN: defense response to bacterium%2C reductive pentose-phosphate cycle%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase%2C type A (InterPro:IPR004788)%3B BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase 2 (TAIR:AT2G01290.1)%3B Has 5044 Blast hits to 5043 proteins in 1956 species: Archae - 235%3B Bacteria - 3572%3B Metazoa - 110%3B Fungi - 145%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 841 (source: NCBI BLink). | ||
| AT2G29570 | gene | PCNA2 | 0.90 | 2:12649906 | Functionally interacts with POLH to repair DNA damaged by UVB damage. May be sumoylated. | ||
| AT5G53160 | gene | RCAR3 | 0.90 | 5:21560601 | Encodes RCAR3%2C a regulatory component of ABA receptor. Interacts with protein phosphatase 2Cs ABI1 and ABI2. Stimulates ABA signaling. | ||
| AT3G47450 | gene | NOA1 | 0.90 | 3:17483068 | Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. In Arabidopsis%2C mutant analyses show that this protein regulates growth and hormonal signaling in plants. It also attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence and cell death. This gene product is also involved in nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins%2C including RBCL%2C ClpP1%2C and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase%2C but%2C the synthase activity was later disproven. In addition%2C new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts. | ||
| GO | domain | Definition | P-value |
|---|---|---|---|
| structural constituent of ribosome | molecular_function | "The action of a molecule that contributes to the structural integrity of the ribosome." [GOC:mah] | 2.11e-41 |
| ribosome | cellular_component | "An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins." [ISBN:0198506732] | 1.89e-37 |
| translation | biological_process | "The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome." [GOC:go_curators] | 1.41e-35 |
| cytosolic ribosome | cellular_component | "A ribosome located in the cytosol." [GOC:mtg_sensu] | 1.31e-34 |
| peptide biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide." [CHEBI:16670, GOC:dph, GOC:jl] | 1.01e-30 |
| cytosolic large ribosomal subunit | cellular_component | "The large subunit of a ribosome located in the cytosol." [GOC:mtg_sensu] | 3.61e-28 |
| cytosol | cellular_component | "The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes." [GOC:hgd, GOC:jl] | 2.04e-22 |
| chloroplast | cellular_component | "A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma." [ISBN:0471245208] | 1.73e-20 |
| ribosome biogenesis | biological_process | "A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis." [GOC:ma] | 1.86e-19 |
| intracellular | cellular_component | "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [ISBN:0198506732] | 2.45e-19 |
| biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GOC:curators, ISBN:0198547684] | 2.78e-19 |
| vacuolar membrane | cellular_component | "The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell." [GOC:ai] | 1.00e-17 |
| cellular biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:jl] | 3.39e-16 |
| response to cadmium ion | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus." [GOC:ai] | 3.39e-16 |
| nitrogen compound metabolic process | biological_process | "The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium." [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732] | 4.02e-16 |
| protein metabolic process | biological_process | "The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification." [GOC:ma] | 1.50e-15 |
| cell wall | cellular_component | "The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins." [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259] | 4.93e-15 |
| cellular protein metabolic process | biological_process | "The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification." [GOC:jl] | 6.44e-15 |
| ribonucleoprotein complex | cellular_component | "A macromolecular complex containing both protein and RNA molecules." [GOC:krc] | 3.32e-13 |
| plasmodesma | cellular_component | "A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell." [ISBN:0198506732] | 7.46e-13 |
| membrane | cellular_component | "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it." [GOC:dos, GOC:mah, ISBN:0815316194] | 1.05e-12 |
| cytoplasmic translation | biological_process | "The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein." [GOC:hjd] | 1.12e-12 |
| response to metal ion | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus." [GOC:sm] | 1.92e-12 |
| response to stimulus | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf] | 1.92e-12 |
| macromolecule biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [CHEBI:33694, GOC:mah] | 3.59e-12 |
| nucleolus | cellular_component | "A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome." [ISBN:0198506732] | 2.81e-11 |
| mitochondrion | cellular_component | "A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration." [GOC:giardia, ISBN:0198506732] | 4.60e-11 |
| ribosome assembly | biological_process | "The aggregation, arrangement and bonding together of the mature ribosome and of its subunits." [GOC:ma] | 1.33e-10 |
| plasma membrane | cellular_component | "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." [ISBN:0716731363] | 2.93e-10 |
| copper ion binding | molecular_function | "Interacting selectively and non-covalently with copper (Cu) ions." [GOC:ai] | 4.06e-10 |
| response to abiotic stimulus | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus." [GOC:hb] | 2.67e-09 |
| vacuole | cellular_component | "A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol." [GOC:mtg_sensu, ISBN:0198506732] | 3.30e-09 |
| Golgi apparatus | cellular_component | "A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions." [ISBN:0198506732] | 3.30e-09 |
| ribosomal large subunit biogenesis | biological_process | "A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis." [GOC:jl] | 5.40e-09 |
| chloroplast stroma | cellular_component | "The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis." [ISBN:0198547684] | 2.75e-08 |
| purine nucleotide metabolic process | biological_process | "The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] | 6.12e-08 |
| response to cytokinin | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus." [GOC:jl] | 8.12e-08 |
| response to salt stress | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment." [GOC:jl] | 8.22e-08 |
| ribonucleoprotein complex assembly | biological_process | "The aggregation, arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex." [GOC:jl] | 1.84e-07 |
| carboxylic acid metabolic process | biological_process | "The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-)." [ISBN:0198506732] | 2.93e-07 |
| purine ribonucleotide metabolic process | biological_process | "The chemical reactions and pathways involving a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] | 3.39e-07 |
| nucleoside phosphate metabolic process | biological_process | "The chemical reactions and pathways involving any phosphorylated nucleoside." [GOC:mah] | 3.66e-07 |
| cytosolic small ribosomal subunit | cellular_component | "The small subunit of a ribosome located in the cytosol." [GOC:mtg_sensu] | 5.65e-07 |
| ribonucleotide metabolic process | biological_process | "The chemical reactions and pathways involving a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] | 7.21e-07 |
| response to hormone | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus." [GOC:jl] | 8.84e-07 |
| rRNA binding | molecular_function | "Interacting selectively and non-covalently with ribosomal RNA." [GOC:jl] | 8.87e-07 |
| response to osmotic stress | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell." [GOC:jl] | 1.68e-06 |
| plant-type cell wall | cellular_component | "A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances." [ISBN:0471245208] | 2.43e-06 |
| nucleotide metabolic process | biological_process | "The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates)." [GOC:ma] | 2.61e-06 |
| ATP metabolic process | biological_process | "The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator." [GOC:go_curators] | 2.73e-06 |
| nucleoside metabolic process | biological_process | "The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine)." [GOC:ma] | 2.75e-06 |
| reactive oxygen species metabolic process | biological_process | "The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers." [CHEBI:26523, GOC:mah] | 3.63e-06 |
| chloroplast envelope | cellular_component | "The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space." [GOC:tb] | 2.13e-05 |
| glycolytic process | biological_process | "The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules." [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis] | 3.41e-05 |
| nucleoside diphosphate phosphorylation | biological_process | "The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate." [GOC:ai] | 4.08e-05 |
| apoplast | cellular_component | "The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it." [GOC:jid] | 4.08e-05 |
| response to karrikin | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants)." [PMID:20351290] | 5.62e-05 |
| pyruvate metabolic process | biological_process | "The chemical reactions and pathways involving pyruvate, 2-oxopropanoate." [GOC:go_curators] | 6.11e-05 |
| oxidoreduction coenzyme metabolic process | biological_process | "The chemical reactions and pathways involving coenzymes that are required, in addition to an enzyme and a substrate, for an oxidoreductase reaction to proceed." [GOC:mah] | 6.35e-05 |
| cellular aldehyde metabolic process | biological_process | "The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells." [GOC:go_curators, ISBN:0198506732] | 7.26e-05 |
| tricarboxylic acid cycle | biological_process | "A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle." [ISBN:0198506732] | 1.51e-04 |
| hydrogen peroxide catabolic process | biological_process | "The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2)." [GOC:jl] | 1.77e-04 |
| response to oxidative stress | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals." [GOC:jl, PMID:12115731] | 1.82e-04 |
| ribosomal small subunit assembly | biological_process | "The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit." [GOC:jl] | 2.13e-04 |
| endoplasmic reticulum | cellular_component | "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached)." [ISBN:0198506732] | 2.20e-04 |
| purine nucleotide biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] | 3.27e-04 |
| nucleoside triphosphate biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] | 3.32e-04 |
| protein homodimerization activity | molecular_function | "Interacting selectively and non-covalently with an identical protein to form a homodimer." [GOC:jl] | 6.98e-04 |
| gluconeogenesis | biological_process | "The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol." [MetaCyc:GLUCONEO-PWY] | 7.36e-04 |
| ribosomal small subunit biogenesis | biological_process | "A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis." [GOC:jl] | 7.94e-04 |
| response to stress | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah] | 8.28e-04 |
| purine ribonucleoside monophosphate biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar." [GOC:go_curators, ISBN:0198506732] | 8.44e-04 |
| response to temperature stimulus | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus." [GOC:hb] | 8.95e-04 |
| nucleotide phosphorylation | biological_process | "The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside." [GOC:ai] | 9.38e-04 |
| citrate metabolic process | biological_process | "The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle." [ISBN:0198506732] | 1.05e-03 |
| cellular amino acid biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents." [ISBN:0198506732] | 1.47e-03 |
| cellular respiration | biological_process | "The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration)." [GOC:das, ISBN:0140513590, ISBN:0198506732] | 1.50e-03 |
| protein binding | molecular_function | "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)." [GOC:go_curators] | 1.93e-03 |
| ribonucleoside monophosphate biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar." [GOC:go_curators, ISBN:0198506732] | 1.94e-03 |
| NADP binding | molecular_function | "Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH." [GOC:ai] | 2.49e-03 |
| GTP binding | molecular_function | "Interacting selectively and non-covalently with GTP, guanosine triphosphate." [GOC:ai] | 2.64e-03 |
| purine ribonucleotide biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] | 2.75e-03 |
| aerobic respiration | biological_process | "The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor." [GOC:das, GOC:jl, ISBN:0140513590] | 2.88e-03 |
| mitochondrial inner membrane | cellular_component | "The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae." [GOC:ai] | 3.00e-03 |
| carbohydrate metabolic process | biological_process | "The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule." [GOC:mah, ISBN:0198506732] | 3.70e-03 |
| large ribosomal subunit | cellular_component | "The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site)." [ISBN:0198506732] | 4.72e-03 |
| small molecule biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule." [GOC:curators, GOC:pde, GOC:vw] | 4.91e-03 |
| structural constituent of cytoskeleton | molecular_function | "The action of a molecule that contributes to the structural integrity of a cytoskeletal structure." [GOC:mah] | 5.00e-03 |
| small ribosomal subunit | cellular_component | "The smaller of the two subunits of a ribosome." [GOC:mah] | 5.00e-03 |
| organic substance transport | biological_process | "The directed movement of organic substances into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. An organic substance is a molecular entity that contains carbon." [CHEBI:50860, GOC:mah] | 5.02e-03 |
| plastid | cellular_component | "Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid." [GOC:jl, ISBN:0198547684] | 5.16e-03 |
| response to light stimulus | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light." [GOC:go_curators, ISBN:0582227089] | 5.41e-03 |
| ion transmembrane transport | biological_process | "A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore." [GOC:mah] | 6.51e-03 |
| response to radiation | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation." [GOC:jl, Wikipedia:Electromagnetic_radiation] | 6.75e-03 |
| RNA binding | molecular_function | "Interacting selectively and non-covalently with an RNA molecule or a portion thereof." [GOC:mah] | 7.01e-03 |
| mitochondrial matrix | cellular_component | "The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation." [GOC:as, ISBN:0198506732] | 7.01e-03 |
| glucose 6-phosphate metabolic process | biological_process | "The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6." [GOC:ai] | 8.69e-03 |
| pentose-phosphate shunt | biological_process | "The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses." [ISBN:0198506732, MetaCyc:PENTOSE-P-PWY] | 1.08e-02 |
| oxidation-reduction process | biological_process | "A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons." [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph] | 1.10e-02 |
| NADP metabolic process | biological_process | "The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH." [GOC:mah] | 1.10e-02 |
| phosphate-containing compound metabolic process | biological_process | "The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid." [GOC:ai] | 1.23e-02 |
| response to bacterium | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium." [GOC:hb] | 1.26e-02 |
| phosphorus metabolic process | biological_process | "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4)." [GOC:ai] | 1.34e-02 |
| nucleotide transport | biological_process | "The directed movement of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, into, out of or within a cell." [ISBN:0198506732] | 1.34e-02 |
| response to abscisic acid | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus." [GOC:jl] | 1.34e-02 |
| response to glucose | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus." [GOC:jl] | 1.34e-02 |
| carbohydrate derivative biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of carbohydrate derivative." [GOC:TermGenie] | 1.37e-02 |
| response to toxic substance | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus." [GOC:lr] | 1.46e-02 |
| cellular amino acid metabolic process | biological_process | "The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells." [CHEBI:33709, GOC:curators, ISBN:0198506732] | 1.56e-02 |
| transaminase activity | molecular_function | "Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid." [ISBN:0198506732] | 1.61e-02 |
| nucleotide biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates)." [GOC:go_curators] | 1.72e-02 |
| localization | biological_process | "Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location." [GOC:ai] | 1.88e-02 |
| water transport | biological_process | "The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] | 2.12e-02 |
| endosome membrane | cellular_component | "The lipid bilayer surrounding an endosome." [GOC:mah] | 2.31e-02 |
| cytoplasm | cellular_component | "All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." [ISBN:0198547684] | 2.34e-02 |
| peroxidase activity | molecular_function | "Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O." [EC:1.11.1.7] | 2.38e-02 |
| transport | biological_process | "The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore." [GOC:dph, GOC:jl, GOC:mah] | 2.40e-02 |
| developmental process | biological_process | "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition." [GOC:isa_complete] | 2.40e-02 |
| anion transmembrane transport | biological_process | "A process in which an anion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore." [GOC:dos, GOC:vw] | 2.40e-02 |
| seed development | biological_process | "The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves." [GOC:jid, PO:0009010] | 2.45e-02 |
| cellular response to abscisic acid stimulus | biological_process | "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus." [GOC:mah] | 2.71e-02 |
| protein localization | biological_process | "Any process in which a protein is transported to, or maintained in, a specific location." [GOC:ai] | 3.36e-02 |
| regulation of protein dephosphorylation | biological_process | "Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein." [GOC:bf] | 3.39e-02 |
| response to UV-B | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm." [GOC:tb] | 3.47e-02 |
| alpha-amino acid metabolic process | biological_process | "The chemical reactions and pathways involving an alpha-amino acid." [GOC:TermGenie] | 3.47e-02 |
| fruit development | biological_process | "The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant." [GOC:sm] | 3.49e-02 |
| embryo development | biological_process | "The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu] | 3.77e-02 |
| embryo development ending in seed dormancy | biological_process | "The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana." [GOC:go_curators, GOC:mtg_sensu] | 3.78e-02 |
| response to reactive oxygen species | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals." [GOC:krc] | 4.24e-02 |
| anion transport | biological_process | "The directed movement of anions, atoms or small molecules with a net negative charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] | 4.26e-02 |
| protein polymerization | biological_process | "The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein." [GOC:ai] | 4.26e-02 |
| shoot system morphogenesis | biological_process | "The process in which the anatomical structures of the shoot are generated and organized. The shoot is the part of a seed plant body that is usually above ground." [GOC:sm, ISBN:0877797099] | 4.74e-02 |
| regulation of phosphoprotein phosphatase activity | biological_process | "Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein." [GOC:jp, PMID:11724821] | 4.80e-02 |
| defense response to bacterium | biological_process | "Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism." [GOC:jl] | 4.99e-02 |