Encodes one of the CRT-Like transporters (CLT1/AT5G19380%2C CLT2/AT4G24460%2C CLT3/AT5G12170). Required for glutathione homeostasis and stress responses. Mutants lacking these transporters are heavy metal-sensitive%2C glutathione(GSH)-deficient%2C and hypersensitive to Phytophthora infection.
MED19A%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Regulator of chromosome condensation (RCC1) family protein%3B CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091)%2C Regulator of chromosome condensation%2C RCC1 (InterPro:IPR000408)%3B BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1)%2C AT3G53260 (PAL2)%2C AT5G04230 (PAL3) and AT3G10340 (PAL4).
encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.
An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase%2C alternate form may not have transmembrane domain.
Encodes LURP1%2C a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.
Encodes a cell division cycle protein%2C a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell%2C sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis%2C cell expansion and cell differentiation.
vascular plant one zinc finger protein 2 (VOZ2)%3B BEST Arabidopsis thaliana protein match is: vascular plant one zinc finger protein (TAIR:AT1G28520.2)%3B Has 87 Blast hits to 82 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 83%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
Encodes a CAX-interacting protein (CXIP4). The gene product is located in the nucleus of GFP-CXIP4-expressing yeast cells. When transiently expressed in the tobacco leaves%2C GFP-CXIP4 locates to the nucleus as well as in discrete areas of the cytoplasm (which do not overlap with mitochondria).
encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.
encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.
Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.
RNA-binding protein%2C putative%2C similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.
A member of EXO70 gene family%2C putative exocyst subunits%2C conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes%2C which can be classified into eight clusters on the phylogenetic tree.
AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C%2C v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-%2C Qb-%2C Qc- and R-SNAREs. R-SNAREs are classified into three groups%2C the Sec22-%2C YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex%2C which governs specific membrane fusions. VAMP7 proteins consist of three distinct domain%2C the N-terminal longin-domain (LD)%2C the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins%2C they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally%2C it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs.
Encodes a protein predicted to act as a RING E3 ubiquitin ligase. It appears to regulate the stability of the KRP1/ICK1 cyclin dependent kinase inhibitor. Induced by beet severe curly virus (BSCTV) C4 protein.
CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598)%2C Protein of unknown function DUF821%2C CAP10-like (InterPro:IPR008539)%3B BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61290.1)%3B Has 683 Blast hits to 672 proteins in 134 species: Archae - 0%3B Bacteria - 47%3B Metazoa - 230%3B Fungi - 121%3B Plants - 246%3B Viruses - 5%3B Other Eukaryotes - 34 (source: NCBI BLink).
Protein kinase family protein with leucine-rich repeat domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein tyrosine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G08850.1)%3B Has 304074 Blast hits to 147448 proteins in 4766 species: Archae - 178%3B Bacteria - 29187%3B Metazoa - 106993%3B Fungi - 12531%3B Plants - 120860%3B Viruses - 430%3B Other Eukaryotes - 33895 (source: NCBI BLink).
Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS)%2C it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie%2C et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.
Its expression is enriched in non-root hair cells (compared to root hair cells) and this enrichment is associated with increase in the transcription-associated mark trimethylation of H3 lysine 4 (H3K4me3) and decrease in the Polycomb silencing-associated mark trimethylation of H3 lysine 27 (H3K27me3) in non-root hair cells relative to root-hair cells. Protein sequence is similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C apple tree%2C PIR:T16995%3B NOT a cinnamyl-alcohol dehydrogenase.
The gene encodes a putative member of the LRR-RLK protein family. Expressin and mutant analysis revealed that it contributes to the interaction between Arabidopsis and Hyaloperonospora arabidopsidis. and
Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves%2C collapsed cells%2C reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself.
Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli).
Encodes a nuclear localized R2R3-type MYB transcription factor that is involved in responses to abiotic stress including cold acclimation%2Cosmotic and salt stress.Mutants are sensitive to salt%2C freezing and osmotic stress.
Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.
Encodes a novel mitochondrial carrier capable of transporting both dicarboxylates (such as malate%2C oxaloacetate%2C oxoglutarate%2C and maleate) and tricarboxylates (such as citrate%2C isocitrate%2C cis-aconitate%2C and trans-aconitate).
encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.
Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder%2C where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.
Plant stearoyl-acyl-carrier-protein desaturase family protein%3B FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity%2C oxidoreductase activity%2C transition metal ion binding%3B INVOLVED IN: oxidation reduction%2C fatty acid metabolic process%2C fatty acid biosynthetic process%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348)%2C Ferritin/ribonucleotide reductase-like (InterPro:IPR009078)%2C Fatty acid desaturase%2C type 2 (InterPro:IPR005067)%3B BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT3G02630.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
GO
domain
Definition
P-value
MAPK cascade
biological_process
"An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell." [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267]
2.04e-03
protein targeting to membrane
biological_process
"The process of directing proteins towards a membrane, usually using signals contained within the protein." [GOC:curators]
1.27e-03
response to stress
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah]
9.33e-03
defense response
biological_process
"Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack." [GOC:go_curators]
1.71e-03
plasmodesma
cellular_component
"A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell." [ISBN:0198506732]
2.03e-02
response to biotic stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism." [GOC:hb]
4.49e-03
response to virus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus." [GOC:hb]
3.39e-02
response to bacterium
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium." [GOC:hb]
9.99e-03
systemic acquired resistance
biological_process
"The salicylic acid mediated response to a pathogen which confers broad spectrum resistance." [GOC:lr, ISBN:052143641]
9.19e-04
salicylic acid biosynthetic process
biological_process
"The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid." [ISBN:0943088399]
3.55e-02
response to salicylic acid
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus." [GOC:jl]
9.99e-03
defense response, incompatible interaction
biological_process
"A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease." [GOC:lr]
"The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance." [GOC:jy]
9.28e-04
salicylic acid mediated signaling pathway
biological_process
"A series of molecular signals mediated by salicylic acid." [GOC:jy]
5.40e-03
jasmonic acid mediated signaling pathway
biological_process
"A series of molecular signals mediated by jasmonic acid." [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850]
2.37e-02
regulation of hydrogen peroxide metabolic process
biological_process
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide." [PMID:14765119]
2.63e-03
regulation of plant-type hypersensitive response
biological_process
"Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response." [PMID:16255244]
8.22e-04
cellulose biosynthetic process
biological_process
"The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation." [GOC:mah, ISBN:0198506732]
3.51e-02
negative regulation of defense response
biological_process
"Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response." [GOC:mah]
2.63e-03
response to endoplasmic reticulum stress
biological_process
"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stress acting at the endoplasmic reticulum. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen." [GOC:cjm, GOC:mah]
1.03e-02
regulation of protein dephosphorylation
biological_process
"Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein." [GOC:bf]
3.51e-02
response to external biotic stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external biotic stimulus, an external stimulus caused by, or produced by living things." [GOC:go_curators]
3.64e-03
innate immune response
biological_process
"Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens." [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]
1.49e-02
defense response to fungus
biological_process
"Reactions triggered in response to the presence of a fungus that act to protect the cell or organism." [GOC:ai]
9.19e-04
response to stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf]
8.49e-03
response to other organism
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism." [GOC:ai]
8.22e-04
defense response to other organism
biological_process
"Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism." [GOC:dos]
