Interaction network for MSAT439
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=31) Type Name LOD score Position Description
AT1G51170 gene UCN 4.59 1:18953458 Encodes an active AGC VIII protein kinase that interacts with the putative transcription factor ATS and regulates planar growth during integument development in the ovule. Mutants exhibit ectopic growth in filaments and petals%2C as well as aberrant embryogenesis.
AT3G49890 gene 4.19 3:18499164 unknown protein%3B Has 27 Blast hits to 27 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 21%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT4G09160 gene 3.86 4:05839599 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Cellular retinaldehyde-binding/triple function%2C N-terminal (InterPro:IPR008273)%2C GOLD (InterPro:IPR009038)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G72160.1)%3B Has 12185 Blast hits to 8606 proteins in 820 species: Archae - 53%3B Bacteria - 1604%3B Metazoa - 4851%3B Fungi - 2300%3B Plants - 1007%3B Viruses - 130%3B Other Eukaryotes - 2240 (source: NCBI BLink).
AT4G14270 gene 3.53 4:08218083 Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.
AT3G45590 gene SEN1 3.37 3:16732540 Encodes a catalytic subunit of tRNA splicing endonuclease.
AT3G52740 gene 3.37 3:19546227 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1)%3B Has 65 Blast hits to 65 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G02490 gene 3.35 3:00513478 Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G15980.1)%3B Has 7105 Blast hits to 3955 proteins in 104 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 4%3B Plants - 7071%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).
AT5G07500 gene PEI1 3.22 5:02372619 Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.
AT2G14850 gene 3.20 2:06385804 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33890.2)%3B Has 140 Blast hits to 132 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 2%3B Plants - 133%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
AT5G11010 gene 3.19 5:03483632 Pre-mRNA cleavage complex II protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655)%3B BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT3G58050 gene 3.18 3:21492145 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1)%3B Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41%3B Bacteria - 766%3B Metazoa - 5596%3B Fungi - 1431%3B Plants - 589%3B Viruses - 46%3B Other Eukaryotes - 4915 (source: NCBI BLink).
AT5G27620 gene CYCH%3B1 3.14 5:09771287 core cell cycle genes
AT3G23090 gene 3.11 3:08214289 TPX2 (targeting protein for Xklp2) protein family%3B CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675)%3B BEST Arabidopsis thaliana protein match is: WVD2-like 1 (TAIR:AT3G04630.3)%3B Has 678 Blast hits to 638 proteins in 104 species: Archae - 2%3B Bacteria - 22%3B Metazoa - 209%3B Fungi - 27%3B Plants - 299%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).
AT1G28060 gene 3.06 1:09778851 Pre-mRNA-splicing factor 3%3B CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881)%3B BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT3G55930.1)%3B Has 22923 Blast hits to 12760 proteins in 707 species: Archae - 18%3B Bacteria - 1085%3B Metazoa - 11525%3B Fungi - 3053%3B Plants - 1999%3B Viruses - 93%3B Other Eukaryotes - 5150 (source: NCBI BLink).
AT1G27880 gene -3.04 1:09708861 DEAD/DEAH box RNA helicase family protein %3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B INVOLVED IN: DNA recombination%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C DNA helicase%2C ATP-dependent%2C RecQ type (InterPro:IPR004589)%2C DNA helicase%2C ATP-dependent%2C RecQ type%2C N-terminal (InterPro:IPR018329)%2C DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (InterPro:IPR002464)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT4G35740.1)%3B Has 41244 Blast hits to 39032 proteins in 2984 species: Archae - 762%3B Bacteria - 21282%3B Metazoa - 5401%3B Fungi - 4173%3B Plants - 3671%3B Viruses - 588%3B Other Eukaryotes - 5367 (source: NCBI BLink).
AT2G21740 gene EC1.2 -3.09 2:09281986 Encodes a small cysteine-rich protein that is secreted by the egg cell during gamete interactions. The regulated secretion of EC1 by the egg cell upon sperm-egg interaction is proposed to ensure the appropriate localization of the cell-fusion machinery in distinct sperm membrane domains to accomplish gamete fusion.
AT1G79710 gene -3.17 1:29994962 Major facilitator superfamily protein%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%2C Biopterin transport-related protein BT1 (InterPro:IPR004324)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G25050.1)%3B Has 1010 Blast hits to 995 proteins in 167 species: Archae - 4%3B Bacteria - 188%3B Metazoa - 0%3B Fungi - 6%3B Plants - 265%3B Viruses - 0%3B Other Eukaryotes - 547 (source: NCBI BLink).
AT3G52360 gene -3.26 3:19412019 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to karrikin%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35850.1)%3B Has 34 Blast hits to 34 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G06680 gene SPC98 -3.28 5:02056528 Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes. Enriched at the post-cytokinetic cell edges in leaves and roots.
AT3G06510 gene SFR2 -3.29 3:02016246 Encodes a protein with beta-glucosidase and galactosyltransferase activity%2C mutants show increased sensitivity to freezing. Though it is classified as a family I glycosyl hydrolase%2C it has no hydrolase activity in vitro.
AT3G26070 gene -3.35 3:09526687 Plastid-lipid associated protein PAP / fibrillin family protein%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C plastoglobule%3B CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843)%3B BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26080.1)%3B Has 483 Blast hits to 479 proteins in 86 species: Archae - 0%3B Bacteria - 99%3B Metazoa - 0%3B Fungi - 0%3B Plants - 334%3B Viruses - 0%3B Other Eukaryotes - 50 (source: NCBI BLink).
AT2G41880 gene GK-1 -3.40 2:17474527 Guanylate kinase. Involved in nucleotide metabolism.
AT3G50740 gene UGT72E1 -3.42 3:18855043 UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.
AT3G63160 gene OEP6 -3.47 3:23333399 FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast outer membrane%2C thylakoid%2C chloroplast thylakoid membrane%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: outer envelope membrane protein 7 (TAIR:AT3G52420.1)%3B Has 26 Blast hits to 26 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 26%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G51310 gene -3.55 5:20852712 Mutants exhibit longer root hairs under phosphate-deficient conditions.
AT2G35110 gene GRL -3.64 2:14795715 Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes%2C a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs. Its ER localization is independent of upstream SPK1 activation signaling and the physical association with the WAVE/SCAR Regulatory complex binding partner SRA1. ER-localized NAP1 has little colocalization with actin and represent the inactive pool of NAP1 in these cell types.
AT3G07890 gene -3.66 3:02516271 Ypt/Rab-GAP domain of gyp1p superfamily protein%3B FUNCTIONS IN: RAB GTPase activator activity%3B INVOLVED IN: regulation of Rab GTPase activity%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195)%3B BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G37290.1)%3B Has 5103 Blast hits to 5093 proteins in 230 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2600%3B Fungi - 1061%3B Plants - 534%3B Viruses - 0%3B Other Eukaryotes - 908 (source: NCBI BLink).
AT4G25650 gene ACD1-LIKE -3.66 4:13080827 Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.
AT1G74710 gene EDS16 -3.79 1:28070295 Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).
AT2G36900 gene MEMB11 -3.96 2:15490560 member of Membrin Gene Family
AT5G05090 gene -4.14 5:01503232 Homeodomain-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10760.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).