Interaction network for MSAT110
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=20) Type Name LOD score Position Description
AT2G36980 gene 4.83 2:15530814 Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1)%3B Has 45451 Blast hits to 13631 proteins in 250 species: Archae - 6%3B Bacteria - 3%3B Metazoa - 113%3B Fungi - 146%3B Plants - 44602%3B Viruses - 0%3B Other Eukaryotes - 581 (source: NCBI BLink).
AT5G35405 gene 4.40 5:13604162 Encodes a ECA1 gametogenesis related family protein
AT3G24270 gene PUM25 4.12 3:08796541 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
AT2G32160 gene 3.96 2:13662138 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B CONTAINS InterPro DOMAIN/s: N2227-like (InterPro:IPR012901)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G32170.1)%3B Has 482 Blast hits to 472 proteins in 199 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 108%3B Fungi - 210%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).
AT2G02330 gene 3.80 2:00613725 pseudogene, similar to P0443G08.20, blastp match of 37% identity and 7.2e-16 P-value to GP [Source:TAIR;Acc:AT2G02330]
AT3G26605 gene 3.77 3:09773018 transposable element gene [Source:TAIR;Acc:AT3G26605]
AT5G49370 gene 3.32 5:20023456 Pleckstrin homology (PH) domain superfamily protein [Source:TAIR;Acc:AT5G49370]
AT3G61970 gene NGA2 3.19 3:22951323 NGATHA2 (NGA2)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT2G46870.1)%3B Has 1373 Blast hits to 1371 proteins in 72 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1373%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT2G38910 gene CPK20 3.17 2:16244906 member of Calcium Dependent Protein Kinase
AT5G28350 gene 3.17 5:10320114 Quinoprotein amine dehydrogenase%2C beta chain-like%3B RIC1-like guanyl-nucleotide exchange factor%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771)%2C WD40 repeat (InterPro:IPR001680)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C Quinoprotein amine dehydrogenase%2C beta chain-like (InterPro:IPR011044)%3B BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase%2C beta chain-like%3B RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G01110 gene 3.08 5:00041768 Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT3G16890 gene PPR40 3.08 3:05767977 Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein%2C PPR40%2C which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt%2C ABA and oxidative stress%2C as well as reduced electron transport through Complex III (cytochrome c reductase).
AT2G16505 gene 3.04 2:07156839 Encodes a Maternally expressed gene (MEG) family protein
AT5G22240 gene OFP10 3.02 5:07364689 OFP10%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458)%3B BEST Arabidopsis thaliana protein match is: ovate family protein 6 (TAIR:AT3G52525.1)%3B Has 400 Blast hits to 400 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 400%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G22950 gene VPS24.1 -3.03 5:07681234 VPS24.1%3B CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024)%3B BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G45000.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT1G28140 gene -3.07 1:09831876 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301%2C transmembrane (InterPro:IPR019275)%3B Has 140 Blast hits to 140 proteins in 72 species: Archae - 0%3B Bacteria - 86%3B Metazoa - 10%3B Fungi - 0%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT2G44900 gene ARABIDILLO-1 -3.48 2:18511313 ARABIDILLO-1 and its homolog%2C ARABIDILLO -2%2C are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots%2C while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.
AT5G47175 gene LCR3 -3.70 5:19160013 Encodes a member of a family of small%2Csecreted%2C cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
AT1G06240 gene -3.77 1:01911095 Protein of unknown function DUF455%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF455 (TAIR:AT5G04520.1)%3B Has 954 Blast hits to 954 proteins in 412 species: Archae - 0%3B Bacteria - 697%3B Metazoa - 13%3B Fungi - 46%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).
AT1G36530 gene -4.99 1:13782102 transposable element gene [Source:TAIR;Acc:AT1G36530]