AT1G31340
gene
RUB1
13.55
1:11217695
Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.
AT1G31600
gene
TRM9
13.23
1:11312961
RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G02485.1)%3B Has 662 Blast hits to 662 proteins in 169 species: Archae - 0%3B Bacteria - 66%3B Metazoa - 255%3B Fungi - 80%3B Plants - 148%3B Viruses - 3%3B Other Eukaryotes - 110 (source: NCBI BLink).
AT1G31120
gene
KUP10
10.12
1:11104237
potassium transporter
AT1G33360
gene
9.93
1:12091780
Encodes ClpX3%2C a subunit of the Clp protease complex.
AT1G32220
gene
9.40
1:11607854
NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: coenzyme binding%2C binding%2C catalytic activity%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: thylakoid%2C chloroplast%2C plastoglobule%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G10730.1)%3B Has 840 Blast hits to 838 proteins in 330 species: Archae - 22%3B Bacteria - 387%3B Metazoa - 19%3B Fungi - 146%3B Plants - 128%3B Viruses - 0%3B Other Eukaryotes - 138 (source: NCBI BLink).
AT1G33102
gene
9.33
1:12002238
unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G32920
gene
6.80
1:11928757
unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to wounding%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1)%3B Has 42 Blast hits to 42 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G33055
gene
6.03
1:11971308
unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: anaerobic respiration%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 6 growth stages%3B Has 20 Blast hits to 20 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 20%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT2G43386
gene
5.95
2:18019449
unknown protein%3B LOCATED IN: endomembrane system%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G32860
gene
5.77
1:11907044
Glycosyl hydrolase superfamily protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: anchored to plasma membrane%2C plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 17 (InterPro:IPR000490)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta-1%2C3-glucanase_putative (TAIR:AT5G42100.1)%3B Has 2148 Blast hits to 2131 proteins in 126 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 2%3B Plants - 2133%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).
AT1G34340
gene
5.69
1:12530815
alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G49950.1)%3B Has 2391 Blast hits to 2388 proteins in 904 species: Archae - 0%3B Bacteria - 1410%3B Metazoa - 329%3B Fungi - 194%3B Plants - 136%3B Viruses - 0%3B Other Eukaryotes - 322 (source: NCBI BLink).
AT1G33140
gene
PGY2
4.88
1:12023225
Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV%2C KAN1 and KAN2.
AT2G16290
gene
4.69
2:07058930
CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16300.1)%3B Has 211 Blast hits to 201 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 211%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G51320
gene
4.63
3:19049543
Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62890.1)%3B Has 32632 Blast hits to 12262 proteins in 174 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 25%3B Fungi - 25%3B Plants - 32307%3B Viruses - 0%3B Other Eukaryotes - 275 (source: NCBI BLink).
AT1G24575
gene
4.46
1:08710847
unknown protein%3B Has 7 Blast hits to 7 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G33790
gene
4.19
1:12256474
jacalin lectin family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229)%3B BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT2G25980.1)%3B Has 1649 Blast hits to 676 proteins in 38 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1641%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
AT2G33600
gene
CRL2
4.17
2:14226668
Encodes a protein with homology to members of the dihydroflavonol-4-reductase (DFR) superfamily. Its expression pattern suggests that AtCRL2 is involved in the synthesis and/or maintenance of vascular tissue.
AT3G02810
gene
4.13
3:00608437
Encodes a receptor-like cytoplasmic kinase localized in the membrane of pollen tube tip regions that controls micropylar pollen tube guidance in Arabidopsis.
AT1G31710
gene
4.08
1:11349697
Copper amine oxidase family protein%3B FUNCTIONS IN: primary amine oxidase activity%2C quinone binding%2C copper ion binding%3B INVOLVED IN: oxidation reduction%2C amine metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Copper amine oxidase%2C N-terminal (InterPro:IPR016182)%2C Copper amine oxidase%2C N2-terminal (InterPro:IPR015800)%2C Copper amine oxidase%2C N2/N3-terminal (InterPro:IPR015801)%2C Copper amine oxidase%2C N3-terminal (InterPro:IPR015802)%2C Copper amine oxidase (InterPro:IPR000269)%2C Copper amine oxidase%2C C-terminal (InterPro:IPR015798)%3B BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31690.1)%3B Has 1551 Blast hits to 1547 proteins in 275 species: Archae - 14%3B Bacteria - 376%3B Metazoa - 251%3B Fungi - 449%3B Plants - 247%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).
AT1G32170
gene
XTH30
4.07
1:11575320
xyloglucan endotransglycosylase-related protein (XTR4)
AT1G43860
gene
3.99
1:16620769
sequence-specific DNA binding transcription factors%3B CONTAINS InterPro DOMAIN/s: Ribosome maturation protein SBDS%2C C-terminal (InterPro:IPR018978)%2C Ribosome maturation protein SBDS (InterPro:IPR002140)%2C Ribosome maturation protein SBDS%2C N-terminal (InterPro:IPR019783)%2C Ribosome maturation protein SBDS%2C conserved site (InterPro:IPR018023)%3B Has 1053 Blast hits to 1042 proteins in 349 species: Archae - 219%3B Bacteria - 2%3B Metazoa - 264%3B Fungi - 287%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 216 (source: NCBI BLink).
AT5G61720
gene
3.93
5:24801505
Protein of unknown function (DUF1216)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28830.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT3G44110
gene
J3
3.92
3:15868631
homologous to the co-chaperon DNAJ protein from E coli
AT1G32410
gene
3.88
1:11693799
Vacuolar protein sorting 55 (VPS55) family protein%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262)%3B BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT3G11530.2)%3B Has 430 Blast hits to 430 proteins in 163 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 181%3B Fungi - 137%3B Plants - 85%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).
AT1G27610
gene
3.87
1:09606968
unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%2C D bilateral stage%3B Has 1 Blast hits to 1 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G11140
gene
CRF1
-3.86
4:06794630
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).
AT2G19540
gene
-3.88
2:08461748
Transducin family protein / WD-40 repeat family protein%3B CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052)%2C WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G16780.1)%3B Has 21764 Blast hits to 15460 proteins in 558 species: Archae - 2%3B Bacteria - 1508%3B Metazoa - 8621%3B Fungi - 5109%3B Plants - 3695%3B Viruses - 0%3B Other Eukaryotes - 2829 (source: NCBI BLink).
AT5G07410
gene
-3.95
5:02345758
Encodes a pectin methylesterase implicated in the remodeling of pectins in pollen. Its expression is restricted to the male gametophyte (dry pollen%2C imbibed pollen and pollen tube). Mutants do not display any phenotype in the vegetative tissues. Pollen germination of KO mutant is strongly delayed in vivo and in vitro. Extra calcium restores the wild type phenotype in vitro.
AT1G28550
gene
RABA1i
-3.95
1:10036601
RAB GTPase homolog A1I (RABA1i)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: male gametophyte%2C flower%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1H (TAIR:AT2G33870.1)%3B Has 26472 Blast hits to 26426 proteins in 734 species: Archae - 24%3B Bacteria - 151%3B Metazoa - 13774%3B Fungi - 3933%3B Plants - 2930%3B Viruses - 20%3B Other Eukaryotes - 5640 (source: NCBI BLink).
AT1G32490
gene
ESP3
-3.96
1:11742006
Encodes a homolog of the yeast PRP2 protein%2C one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing.
AT1G01310
gene
-3.97
1:00120154
CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: extracellular region%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related%2C conserved site (InterPro:IPR018244)%2C Allergen V5/Tpx-1 related (InterPro:IPR001283)%2C Ves allergen (InterPro:IPR002413)%2C SCP-like extracellular (InterPro:IPR014044)%3B BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT3G09590.1)%3B Has 2987 Blast hits to 2892 proteins in 368 species: Archae - 0%3B Bacteria - 64%3B Metazoa - 1591%3B Fungi - 333%3B Plants - 892%3B Viruses - 0%3B Other Eukaryotes - 107 (source: NCBI BLink).
AT1G11770
gene
-3.98
1:03975607
FAD-binding Berberine family protein%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C FAD binding%2C catalytic activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: FAD-binding%2C type 2 (InterPro:IPR016166)%2C Berberine/berberine-like (InterPro:IPR012951)%2C FAD linked oxidase%2C N-terminal (InterPro:IPR006094)%3B BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G01980.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT2G25305
gene
-4.02
2:10774501
Encodes a defensin-like (DEFL) family protein.
AT2G46572
gene
-4.03
2:19126134
Potential natural antisense gene%2C locus overlaps with AT2G46570
AT1G33110
gene
-4.03
1:12004854
MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33100.1)%3B Has 9952 Blast hits to 9876 proteins in 1988 species: Archae - 205%3B Bacteria - 7065%3B Metazoa - 140%3B Fungi - 326%3B Plants - 1371%3B Viruses - 0%3B Other Eukaryotes - 845 (source: NCBI BLink).
AT1G31410
gene
-4.06
1:11246817
putrescine-binding periplasmic protein-related%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Bacterial periplasmic spermidine/putrescine-binding protein (InterPro:IPR001188)%2C Bacterial extracellular solute-binding%2C family 1 (InterPro:IPR006059)%3B Has 4685 Blast hits to 4685 proteins in 1552 species: Archae - 5%3B Bacteria - 4396%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 247 (source: NCBI BLink).
AT1G51380
gene
-4.09
1:19047672
DEA(D/H)-box RNA helicase family protein%3B FUNCTIONS IN: helicase activity%2C ATP binding%2C ATP-dependent helicase activity%2C nucleic acid binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1)%3B Has 43039 Blast hits to 42379 proteins in 3015 species: Archae - 601%3B Bacteria - 21889%3B Metazoa - 6256%3B Fungi - 4531%3B Plants - 2596%3B Viruses - 24%3B Other Eukaryotes - 7142 (source: NCBI BLink).
AT2G47420
gene
DIM1A
-4.11
2:19457374
Encodes a putative rRNA dimethyltransferase.
AT2G45530
gene
-4.14
2:18756471
RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G60580.4)%3B Has 964 Blast hits to 960 proteins in 87 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 324%3B Fungi - 6%3B Plants - 589%3B Viruses - 3%3B Other Eukaryotes - 42 (source: NCBI BLink).
AT5G47610
gene
-4.16
5:19301130
RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G17245.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT3G43860
gene
GH9A4
-4.22
3:15706954
glycosyl hydrolase 9A4 (GH9A4)%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341)%2C Six-hairpin glycosidase-like (InterPro:IPR008928)%2C Glycoside hydrolase%2C family 9 (InterPro:IPR001701)%3B BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1)%3B Has 1796 Blast hits to 1785 proteins in 262 species: Archae - 2%3B Bacteria - 633%3B Metazoa - 188%3B Fungi - 19%3B Plants - 915%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).
AT5G28627
gene
-4.23
5:10634056
transposable element gene [Source:TAIR;Acc:AT5G28627]
AT4G24150
gene
GRF8
-4.29
4:12535972
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family%2C containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.
AT3G01430
gene
-4.30
3:00165392
BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)%3B Has 98 Blast hits to 98 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G07610
gene
IBM1
-4.43
3:02425884
IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation%2C including small narrow leaves%2C arrested flower development%2C and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase.
AT1G32500
gene
ABCI7
-4.45
1:11749798
Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.
AT1G12910
gene
ATAN11
-4.54
1:04394897
Encodes LIGHT-REGULATED WD1 (LWD1)%2C a clock proteins regulating circadian period length and photoperiodic flowering.
AT2G27510
gene
FD3
-4.63
2:11757955
ferredoxin 3 (FD3)%3B FUNCTIONS IN: electron carrier activity%2C iron-sulfur cluster binding%2C 2 iron%2C 2 sulfur cluster binding%3B INVOLVED IN: electron transport chain%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin%2C iron-sulphur binding site (InterPro:IPR006058)%2C Ferredoxin (InterPro:IPR001041)%2C Ferredoxin [2Fe-2S]%2C plant (InterPro:IPR010241)%2C Beta-grasp fold%2C ferredoxin-type (InterPro:IPR012675)%3B BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT1G60950.1)%3B Has 7538 Blast hits to 7536 proteins in 1339 species: Archae - 137%3B Bacteria - 5569%3B Metazoa - 7%3B Fungi - 12%3B Plants - 623%3B Viruses - 5%3B Other Eukaryotes - 1185 (source: NCBI BLink).
AT1G35500
gene
-4.65
1:13066087
unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35614.1)%3B Has 8 Blast hits to 8 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 8%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G10570
gene
CYP77A6
-4.85
3:03301887
member of CYP77A
AT3G12685
gene
-5.29
3:04029183
Acid phosphatase/vanadium-dependent haloperoxidase-related protein%3B CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832)%3B BEST Arabidopsis thaliana protein match is: Acid phosphatase/vanadium-dependent haloperoxidase-related protein (TAIR:AT1G24350.1)%3B Has 1099 Blast hits to 1099 proteins in 402 species: Archae - 0%3B Bacteria - 719%3B Metazoa - 0%3B Fungi - 0%3B Plants - 229%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink).
AT1G31970
gene
STRS1
-5.49
1:11479763
STRESS RESPONSE SUPPRESSOR 1 (STRS1)%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G63120.2)%3B Has 53114 Blast hits to 49629 proteins in 3238 species: Archae - 911%3B Bacteria - 25415%3B Metazoa - 8113%3B Fungi - 5284%3B Plants - 3075%3B Viruses - 103%3B Other Eukaryotes - 10213 (source: NCBI BLink).
AT4G12810
gene
-5.55
4:07522831
F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G12820.1)%3B Has 332 Blast hits to 322 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 332%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G34030
gene
-5.90
1:12370065
Ribosomal protein S13/S18 family%3B FUNCTIONS IN: structural constituent of ribosome%2C protein binding%3B INVOLVED IN: translation%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like%2C H2TH (InterPro:IPR010979)%2C Ribosomal protein S13%2C conserved site (InterPro:IPR018269)%2C Ribosomal protein S13 (InterPro:IPR001892)%3B BEST Arabidopsis thaliana protein match is: S18 ribosomal protein (TAIR:AT4G09800.1)%3B Has 7956 Blast hits to 7953 proteins in 2911 species: Archae - 236%3B Bacteria - 5065%3B Metazoa - 352%3B Fungi - 176%3B Plants - 401%3B Viruses - 0%3B Other Eukaryotes - 1726 (source: NCBI BLink).
AT1G34200
gene
-6.09
1:12455653
Glyceraldehyde-3-phosphate dehydrogenase-like family protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxidoreductase%2C N-terminal (InterPro:IPR000683)%2C Oxidoreductase%2C C-terminal (InterPro:IPR004104)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: Oxidoreductase family protein (TAIR:AT4G09670.1)%3B Has 11880 Blast hits to 11879 proteins in 1945 species: Archae - 244%3B Bacteria - 8550%3B Metazoa - 214%3B Fungi - 474%3B Plants - 94%3B Viruses - 0%3B Other Eukaryotes - 2304 (source: NCBI BLink).
AT1G32400
gene
TOM2A
-6.28
1:11689064
TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal%2C essential for efficient multiplication of tobacco mosaic viruses.
AT1G32310
gene
SAMBA
-6.52
1:11653500
Encodes a plant-specific negative regulator of the APC/C complex. It is expressed during embryogenesis and early plant development and plays a key role in organ size control. Mutants are defective in mitosis I of pollen development%2C resulting in pollen without sperm nuclei.
AT4G08940
gene
-7.11
4:05730797
Ubiquitin carboxyl-terminal hydrolase family protein%3B CONTAINS InterPro DOMAIN/s: RNA recognition domain%2C plant (InterPro:IPR021099)%3B BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G01037.1)%3B Has 405 Blast hits to 399 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 405%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G31940
gene
-7.30
1:11470056
unknown protein%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1)%3B Has 67 Blast hits to 67 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G32870
gene
NAC13
-8.70
1:11911631
NAC domain protein 13 (NAC13)%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 16 (TAIR:AT1G34180.1)%3B Has 2951 Blast hits to 2946 proteins in 83 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 2%3B Plants - 2931%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).
AT5G17270
gene
-11.70
5:05679922
Protein prenylyltransferase superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G37130.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT1G33560
gene
ADR1
-13.66
1:12168768
Encodes a NBS-LRR disease resistance protein that possesses N-terminal kinase subdomains. Activation tagged mutant of ADR1 showed elevated levels of SA and reactive oxygen species in addition to number of defense gene transcripts. Exhibits resistance to number of microbial pathogens.
AT5G59000
gene
-14.48
5:23818184
RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G05830.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT1G01840
gene
-14.52
1:00303537
unknown protein%3B Has 23 Blast hits to 23 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 23%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT2G42110
gene
-15.64
2:17562030
unknown protein%3B Has 27 Blast hits to 27 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT1G30935
gene
-16.09
1:11017436
pseudogene, F-box protein family, contains F-box domain Pfam:PF00646 [Source:TAIR;Acc:AT1G30935]
AT1G33265
gene
-17.09
1:12066595
Transmembrane proteins 14C%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136%2C Transmembrane (InterPro:IPR005349)%3B Has 188 Blast hits to 188 proteins in 62 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 41%3B Fungi - 4%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).
