Interaction network for RSM_5_3.85
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=29) Type Name LOD score Position Description
AT5G15254 gene 5.32 5:04953095 unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G15254]
AT5G11150 gene VAMP713 4.74 5:03546200 Member of Synaptobrevin-like AtVAMP7C%2C v-SNARE protein family.
AT5G54460 gene 4.32 5:22110425 wound-responsive protein-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G15240 gene 3.52 5:04947577 Transmembrane amino acid transporter family protein%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G28960.1)%3B Has 5045 Blast hits to 4985 proteins in 317 species: Archae - 15%3B Bacteria - 153%3B Metazoa - 1796%3B Fungi - 1055%3B Plants - 1275%3B Viruses - 9%3B Other Eukaryotes - 742 (source: NCBI BLink).
AT4G14480 gene 3.44 4:08329906 Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G14720.1)%3B Has 121171 Blast hits to 119626 proteins in 3383 species: Archae - 90%3B Bacteria - 13775%3B Metazoa - 44497%3B Fungi - 12077%3B Plants - 30839%3B Viruses - 477%3B Other Eukaryotes - 19416 (source: NCBI BLink).
AT5G22240 gene OFP10 3.32 5:07364689 OFP10%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458)%3B BEST Arabidopsis thaliana protein match is: ovate family protein 6 (TAIR:AT3G52525.1)%3B Has 400 Blast hits to 400 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 400%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G03406 gene 3.31 5:00839754 Class II aaRS and biotin synthetases superfamily protein%3B FUNCTIONS IN: histidine-tRNA ligase activity%2C aminoacyl-tRNA ligase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: histidyl-tRNA aminoacylation%2C translation%2C tRNA aminoacylation for protein translation%3B LOCATED IN: cytoplasm%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%2C Histidyl-tRNA synthetase%2C class IIa (InterPro:IPR004516)%3B BEST Arabidopsis thaliana protein match is: Histidyl-tRNA synthetase 1 (TAIR:AT3G46100.1)%3B Has 9735 Blast hits to 9726 proteins in 2912 species: Archae - 252%3B Bacteria - 6828%3B Metazoa - 173%3B Fungi - 149%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 2251 (source: NCBI BLink).
AT5G07680 gene NAC080 3.30 5:02435795 NAC domain containing protein 80 (NAC080)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: multicellular organismal development%2C regulation of transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 100 (TAIR:AT5G61430.1)%3B Has 3092 Blast hits to 3083 proteins in 75 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 3092%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G12140 gene CYS1 3.27 5:03922591 Encodes a cystatin.
AT1G15610 gene 3.26 1:05370677 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15630.1)%3B Has 129 Blast hits to 129 proteins in 15 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G12660 gene FLA14 3.26 3:04019060 fasciclin-like arabinogalactan-protein%2C family (FLA14)
AT1G51250 gene 3.25 1:19001424 Plant self-incompatibility protein S1 family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264)%3B BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT1G51240.1)%3B Has 56 Blast hits to 56 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G06805 gene 3.23 5:02106097 transposable element gene [Source:TAIR;Acc:AT5G06805]
AT4G01026 gene PYL7 3.16 4:00446978 Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2. PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of ABI1 and ABI2.
AT4G05180 gene PSBQ-2 3.15 4:02671523 Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.
AT5G13170 gene SAG29 3.12 5:04181042 Encodes a member of the SWEET sucrose efflux transporter family proteins.
AT3G57770 gene 3.11 3:21397542 Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: shoot%2C stem%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G57700.1)%3B Has 31980 Blast hits to 31686 proteins in 859 species: Archae - 12%3B Bacteria - 542%3B Metazoa - 6797%3B Fungi - 843%3B Plants - 21680%3B Viruses - 85%3B Other Eukaryotes - 2021 (source: NCBI BLink).
AT5G10960 gene -3.01 5:03464098 Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT1G80780.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT1G79130 gene -3.09 1:29771218 SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G16510.1)%3B Has 1191 Blast hits to 1188 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1190%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT3G30400 gene -3.09 3:12009590 transposable element gene [Source:TAIR;Acc:AT3G30400]
AT4G08076 gene -3.14 4:04951479 transposable element gene [Source:TAIR;Acc:AT4G08076]
AT2G34480 gene -3.58 2:14532624 Ribosomal protein L18ae/LX family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae/LX (InterPro:IPR021138)%2C Ribosomal protein L18ae (InterPro:IPR002670)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae/LX family protein (TAIR:AT1G29965.1)%3B Has 759 Blast hits to 757 proteins in 282 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 315%3B Fungi - 159%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 130 (source: NCBI BLink).
AT3G43080 gene -3.64 3:15072355 transposable element gene [Source:TAIR;Acc:AT3G43080]
AT5G12130 gene PDE149 -3.67 5:03919428 PIGMENT DEFECTIVE 149 (PDE149)%3B CONTAINS InterPro DOMAIN/s: Integral membrane protein TerC (InterPro:IPR005496)%2C Integral membrane protein TerC%2C riboswitch-linked (InterPro:IPR022369)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G45730 gene -3.69 5:18551809 Cysteine/Histidine-rich C1 domain family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C DC1 (InterPro:IPR004146)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C C1-like (InterPro:IPR011424)%3B BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G06990.1)%3B Has 1655 Blast hits to 634 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 0%3B Plants - 1637%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).
AT5G27980 gene -3.91 5:10015774 Seed maturation protein%3B CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011)%3B BEST Arabidopsis thaliana protein match is: Seed maturation protein (TAIR:AT3G22490.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G08580 gene -4.09 5:02780450 Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT4G27790.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G13490 gene AAC2 -5.02 5:04335272 Encodes mitochondrial ADP/ATP carrier
AT5G13440 gene -5.15 5:04307973 Ubiquinol-cytochrome C reductase iron-sulfur subunit%3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: mitochondrion%2C mitochondrial respiratory chain complex III%3B EXPRESSED IN: guard cell%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome c reductase%2C iron-sulphur subunit (InterPro:IPR006317)%2C Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941)%2C Rieske iron-sulphur protein%2C C-terminal (InterPro:IPR005805)%2C Rieske iron-sulphur protein (InterPro:IPR014349)%2C Ubiquinol cytochrome reductase%2C transmembrane domain (InterPro:IPR004192)%3B BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase iron-sulfur subunit (TAIR:AT5G13430.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
GO domain Definition P-value
vacuolar membrane cellular_component "The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell." [GOC:ai] 2.56e-02